Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08490

Experiment: without_iron1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS08485 and AMB_RS08490 are separated by 5 nucleotidesAMB_RS08490 and AMB_RS08495 are separated by 2 nucleotides AMB_RS08485: AMB_RS08485 - hypothetical protein, at 1,815,020 to 1,816,237 _RS08485 AMB_RS08490: AMB_RS08490 - FAD-dependent oxidoreductase, at 1,816,243 to 1,817,478 _RS08490 AMB_RS08495: AMB_RS08495 - hypothetical protein, at 1,817,481 to 1,818,890 _RS08495 Position (kb) 1816 1817 1818Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1815.263 kb on + strand, within AMB_RS08485at 1815.264 kb on - strand, within AMB_RS08485at 1815.309 kb on - strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.440 kb on + strand, within AMB_RS08485at 1815.441 kb on - strand, within AMB_RS08485at 1815.441 kb on - strand, within AMB_RS08485at 1815.441 kb on - strand, within AMB_RS08485at 1815.441 kb on - strand, within AMB_RS08485at 1815.441 kb on - strand, within AMB_RS08485at 1815.441 kb on - strand, within AMB_RS08485at 1815.441 kb on - strand, within AMB_RS08485at 1815.486 kb on - strand, within AMB_RS08485at 1815.545 kb on + strand, within AMB_RS08485at 1815.545 kb on + strand, within AMB_RS08485at 1815.545 kb on + strand, within AMB_RS08485at 1815.546 kb on - strand, within AMB_RS08485at 1815.546 kb on - strand, within AMB_RS08485at 1815.554 kb on + strand, within AMB_RS08485at 1815.554 kb on + strand, within AMB_RS08485at 1815.555 kb on - strand, within AMB_RS08485at 1815.555 kb on - strand, within AMB_RS08485at 1815.555 kb on - strand, within AMB_RS08485at 1815.555 kb on - strand, within AMB_RS08485at 1815.555 kb on - strand, within AMB_RS08485at 1815.827 kb on + strand, within AMB_RS08485at 1815.828 kb on - strand, within AMB_RS08485at 1816.056 kb on - strand, within AMB_RS08485at 1816.079 kb on + strand, within AMB_RS08485at 1816.079 kb on + strand, within AMB_RS08485at 1816.079 kb on + strand, within AMB_RS08485at 1816.080 kb on - strand, within AMB_RS08485at 1816.080 kb on - strand, within AMB_RS08485at 1816.080 kb on - strand, within AMB_RS08485at 1816.080 kb on - strand, within AMB_RS08485at 1816.080 kb on - strand, within AMB_RS08485at 1816.261 kb on + strandat 1816.261 kb on + strandat 1816.261 kb on + strandat 1816.261 kb on + strandat 1816.261 kb on + strandat 1816.261 kb on + strandat 1816.261 kb on + strandat 1816.262 kb on - strandat 1816.262 kb on - strandat 1816.370 kb on - strand, within AMB_RS08490at 1816.390 kb on + strand, within AMB_RS08490at 1816.390 kb on + strand, within AMB_RS08490at 1816.391 kb on - strand, within AMB_RS08490at 1816.391 kb on - strand, within AMB_RS08490at 1816.391 kb on - strand, within AMB_RS08490at 1816.468 kb on + strand, within AMB_RS08490at 1816.468 kb on + strand, within AMB_RS08490at 1816.468 kb on + strand, within AMB_RS08490at 1816.469 kb on - strand, within AMB_RS08490at 1816.469 kb on - strand, within AMB_RS08490at 1816.469 kb on - strand, within AMB_RS08490at 1816.618 kb on + strand, within AMB_RS08490at 1816.618 kb on + strand, within AMB_RS08490at 1816.618 kb on + strand, within AMB_RS08490at 1816.618 kb on + strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.793 kb on - strand, within AMB_RS08490at 1817.209 kb on + strand, within AMB_RS08490at 1817.209 kb on + strand, within AMB_RS08490at 1817.209 kb on + strand, within AMB_RS08490at 1817.210 kb on - strand, within AMB_RS08490at 1817.336 kb on - strand, within AMB_RS08490at 1817.476 kb on + strandat 1817.476 kb on + strandat 1817.477 kb on - strandat 1817.477 kb on - strandat 1817.477 kb on - strandat 1817.766 kb on + strand, within AMB_RS08495at 1817.767 kb on - strand, within AMB_RS08495at 1818.054 kb on + strand, within AMB_RS08495at 1818.054 kb on + strand, within AMB_RS08495at 1818.054 kb on + strand, within AMB_RS08495at 1818.055 kb on - strand, within AMB_RS08495at 1818.141 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.259 kb on - strand, within AMB_RS08495at 1818.259 kb on - strand, within AMB_RS08495at 1818.259 kb on - strand, within AMB_RS08495at 1818.259 kb on - strand, within AMB_RS08495at 1818.259 kb on - strand, within AMB_RS08495at 1818.259 kb on - strand, within AMB_RS08495at 1818.282 kb on + strand, within AMB_RS08495at 1818.282 kb on + strand, within AMB_RS08495at 1818.282 kb on + strand, within AMB_RS08495at 1818.282 kb on + strand, within AMB_RS08495at 1818.282 kb on + strand, within AMB_RS08495at 1818.423 kb on + strand, within AMB_RS08495at 1818.423 kb on + strand, within AMB_RS08495at 1818.447 kb on + strand, within AMB_RS08495at 1818.447 kb on + strand, within AMB_RS08495at 1818.447 kb on + strand, within AMB_RS08495

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction without_iron1
remove
1,815,263 + AMB_RS08485 0.20 -0.3
1,815,264 - AMB_RS08485 0.20 -1.4
1,815,309 - AMB_RS08485 0.24 -0.1
1,815,440 + AMB_RS08485 0.34 -0.2
1,815,440 + AMB_RS08485 0.34 -0.2
1,815,440 + AMB_RS08485 0.34 -0.9
1,815,440 + AMB_RS08485 0.34 -0.8
1,815,440 + AMB_RS08485 0.34 -1.2
1,815,440 + AMB_RS08485 0.34 +0.2
1,815,440 + AMB_RS08485 0.34 +0.2
1,815,440 + AMB_RS08485 0.34 -0.2
1,815,440 + AMB_RS08485 0.34 -0.3
1,815,441 - AMB_RS08485 0.35 -0.8
1,815,441 - AMB_RS08485 0.35 -0.1
1,815,441 - AMB_RS08485 0.35 -0.7
1,815,441 - AMB_RS08485 0.35 -0.6
1,815,441 - AMB_RS08485 0.35 -1.4
1,815,441 - AMB_RS08485 0.35 -0.4
1,815,441 - AMB_RS08485 0.35 +0.1
1,815,486 - AMB_RS08485 0.38 -0.8
1,815,545 + AMB_RS08485 0.43 +0.2
1,815,545 + AMB_RS08485 0.43 -0.7
1,815,545 + AMB_RS08485 0.43 +0.0
1,815,546 - AMB_RS08485 0.43 -0.8
1,815,546 - AMB_RS08485 0.43 +0.2
1,815,554 + AMB_RS08485 0.44 +0.7
1,815,554 + AMB_RS08485 0.44 -0.7
1,815,555 - AMB_RS08485 0.44 +0.4
1,815,555 - AMB_RS08485 0.44 +0.2
1,815,555 - AMB_RS08485 0.44 -0.7
1,815,555 - AMB_RS08485 0.44 -0.1
1,815,555 - AMB_RS08485 0.44 -1.6
1,815,827 + AMB_RS08485 0.66 -0.1
1,815,828 - AMB_RS08485 0.66 -0.8
1,816,056 - AMB_RS08485 0.85 +0.1
1,816,079 + AMB_RS08485 0.87 -0.4
1,816,079 + AMB_RS08485 0.87 -0.2
1,816,079 + AMB_RS08485 0.87 +1.2
1,816,080 - AMB_RS08485 0.87 -0.4
1,816,080 - AMB_RS08485 0.87 +0.1
1,816,080 - AMB_RS08485 0.87 -1.4
1,816,080 - AMB_RS08485 0.87 +0.4
1,816,080 - AMB_RS08485 0.87 +0.8
1,816,261 + -0.1
1,816,261 + +0.0
1,816,261 + -0.7
1,816,261 + -0.2
1,816,261 + -0.3
1,816,261 + +0.3
1,816,261 + +2.2
1,816,262 - +0.4
1,816,262 - -1.3
1,816,370 - AMB_RS08490 0.10 -0.2
1,816,390 + AMB_RS08490 0.12 -2.1
1,816,390 + AMB_RS08490 0.12 -0.2
1,816,391 - AMB_RS08490 0.12 +0.1
1,816,391 - AMB_RS08490 0.12 -0.1
1,816,391 - AMB_RS08490 0.12 -0.1
1,816,468 + AMB_RS08490 0.18 +0.4
1,816,468 + AMB_RS08490 0.18 -0.1
1,816,468 + AMB_RS08490 0.18 -0.0
1,816,469 - AMB_RS08490 0.18 +0.4
1,816,469 - AMB_RS08490 0.18 -0.1
1,816,469 - AMB_RS08490 0.18 -0.2
1,816,618 + AMB_RS08490 0.30 -2.5
1,816,618 + AMB_RS08490 0.30 +1.6
1,816,618 + AMB_RS08490 0.30 -0.3
1,816,618 + AMB_RS08490 0.30 -1.6
1,816,619 - AMB_RS08490 0.30 -0.6
1,816,619 - AMB_RS08490 0.30 +0.1
1,816,619 - AMB_RS08490 0.30 +0.2
1,816,619 - AMB_RS08490 0.30 -0.0
1,816,619 - AMB_RS08490 0.30 -0.2
1,816,619 - AMB_RS08490 0.30 +0.1
1,816,619 - AMB_RS08490 0.30 +1.4
1,816,793 - AMB_RS08490 0.44 +0.8
1,817,209 + AMB_RS08490 0.78 +0.4
1,817,209 + AMB_RS08490 0.78 +0.3
1,817,209 + AMB_RS08490 0.78 +1.2
1,817,210 - AMB_RS08490 0.78 +0.2
1,817,336 - AMB_RS08490 0.88 -1.3
1,817,476 + +0.1
1,817,476 + -0.8
1,817,477 - -0.8
1,817,477 - +0.5
1,817,477 - -0.3
1,817,766 + AMB_RS08495 0.20 -1.4
1,817,767 - AMB_RS08495 0.20 -0.4
1,818,054 + AMB_RS08495 0.41 -1.4
1,818,054 + AMB_RS08495 0.41 -0.5
1,818,054 + AMB_RS08495 0.41 -0.6
1,818,055 - AMB_RS08495 0.41 -2.4
1,818,141 + AMB_RS08495 0.47 -0.8
1,818,258 + AMB_RS08495 0.55 -0.3
1,818,258 + AMB_RS08495 0.55 +0.0
1,818,258 + AMB_RS08495 0.55 +0.2
1,818,258 + AMB_RS08495 0.55 +0.2
1,818,258 + AMB_RS08495 0.55 -0.6
1,818,258 + AMB_RS08495 0.55 +0.2
1,818,258 + AMB_RS08495 0.55 +0.4
1,818,258 + AMB_RS08495 0.55 +0.5
1,818,258 + AMB_RS08495 0.55 -0.2
1,818,258 + AMB_RS08495 0.55 -0.2
1,818,258 + AMB_RS08495 0.55 -0.1
1,818,258 + AMB_RS08495 0.55 -0.7
1,818,259 - AMB_RS08495 0.55 +0.2
1,818,259 - AMB_RS08495 0.55 -0.2
1,818,259 - AMB_RS08495 0.55 -0.6
1,818,259 - AMB_RS08495 0.55 -0.1
1,818,259 - AMB_RS08495 0.55 +0.2
1,818,259 - AMB_RS08495 0.55 +0.2
1,818,282 + AMB_RS08495 0.57 -0.4
1,818,282 + AMB_RS08495 0.57 -0.0
1,818,282 + AMB_RS08495 0.57 -3.3
1,818,282 + AMB_RS08495 0.57 +0.2
1,818,282 + AMB_RS08495 0.57 -0.3
1,818,423 + AMB_RS08495 0.67 -1.4
1,818,423 + AMB_RS08495 0.67 +0.8
1,818,447 + AMB_RS08495 0.69 +0.3
1,818,447 + AMB_RS08495 0.69 -0.6
1,818,447 + AMB_RS08495 0.69 -0.6

Or see this region's nucleotide sequence