Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06465

Experiment: without_iron1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06460 and AMB_RS06465 are separated by 65 nucleotidesAMB_RS06465 and AMB_RS06470 are separated by 36 nucleotidesAMB_RS06470 and AMB_RS06475 are separated by 4 nucleotides AMB_RS06460: AMB_RS06460 - septation protein A, at 1,373,223 to 1,373,801 _RS06460 AMB_RS06465: AMB_RS06465 - transcriptional regulator, at 1,373,867 to 1,374,772 _RS06465 AMB_RS06470: AMB_RS06470 - glutathione S-transferase, at 1,374,809 to 1,375,489 _RS06470 AMB_RS06475: AMB_RS06475 - hypothetical protein, at 1,375,494 to 1,376,392 _RS06475 Position (kb) 1373 1374 1375Strain fitness (log2 ratio) -3 -2 -1 0 1at 1372.924 kb on + strandat 1372.925 kb on - strandat 1372.925 kb on - strandat 1373.059 kb on + strandat 1373.059 kb on + strandat 1373.062 kb on - strandat 1373.062 kb on - strandat 1373.108 kb on + strandat 1373.108 kb on + strandat 1373.109 kb on - strandat 1373.109 kb on - strandat 1373.109 kb on - strandat 1373.119 kb on + strandat 1373.119 kb on + strandat 1373.119 kb on + strandat 1373.178 kb on + strandat 1373.178 kb on + strandat 1373.524 kb on + strand, within AMB_RS06460at 1373.754 kb on + strandat 1374.051 kb on + strand, within AMB_RS06465at 1374.051 kb on + strand, within AMB_RS06465at 1374.052 kb on - strand, within AMB_RS06465at 1374.052 kb on - strand, within AMB_RS06465at 1374.052 kb on - strand, within AMB_RS06465at 1374.264 kb on + strand, within AMB_RS06465at 1374.544 kb on + strand, within AMB_RS06465at 1374.547 kb on - strand, within AMB_RS06465at 1374.774 kb on + strandat 1374.777 kb on - strandat 1374.896 kb on + strand, within AMB_RS06470at 1374.897 kb on - strand, within AMB_RS06470at 1374.925 kb on + strand, within AMB_RS06470at 1374.926 kb on - strand, within AMB_RS06470at 1374.969 kb on - strand, within AMB_RS06470at 1375.092 kb on - strand, within AMB_RS06470at 1375.106 kb on + strand, within AMB_RS06470at 1375.358 kb on + strand, within AMB_RS06470at 1375.358 kb on + strand, within AMB_RS06470at 1375.358 kb on + strand, within AMB_RS06470at 1375.358 kb on + strand, within AMB_RS06470at 1375.358 kb on + strand, within AMB_RS06470at 1375.359 kb on - strand, within AMB_RS06470at 1375.359 kb on - strand, within AMB_RS06470at 1375.359 kb on - strand, within AMB_RS06470at 1375.359 kb on - strand, within AMB_RS06470at 1375.359 kb on - strand, within AMB_RS06470at 1375.359 kb on - strand, within AMB_RS06470at 1375.364 kb on + strand, within AMB_RS06470at 1375.364 kb on + strand, within AMB_RS06470at 1375.364 kb on + strand, within AMB_RS06470at 1375.364 kb on + strand, within AMB_RS06470at 1375.364 kb on + strand, within AMB_RS06470at 1375.365 kb on - strand, within AMB_RS06470at 1375.365 kb on - strand, within AMB_RS06470at 1375.367 kb on - strand, within AMB_RS06470at 1375.406 kb on + strand, within AMB_RS06470at 1375.406 kb on + strand, within AMB_RS06470at 1375.406 kb on + strand, within AMB_RS06470at 1375.406 kb on + strand, within AMB_RS06470at 1375.406 kb on + strand, within AMB_RS06470at 1375.406 kb on + strand, within AMB_RS06470at 1375.407 kb on - strand, within AMB_RS06470at 1375.558 kb on + strandat 1375.558 kb on + strandat 1375.558 kb on + strandat 1375.558 kb on + strandat 1375.558 kb on + strandat 1375.559 kb on - strandat 1375.559 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron1
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1,372,924 + +1.4
1,372,925 - -0.4
1,372,925 - -0.4
1,373,059 + -0.1
1,373,059 + -0.1
1,373,062 - -1.0
1,373,062 - +0.2
1,373,108 + -0.1
1,373,108 + -0.4
1,373,109 - -0.4
1,373,109 - +0.6
1,373,109 - -0.8
1,373,119 + -0.2
1,373,119 + -0.2
1,373,119 + +1.2
1,373,178 + +0.7
1,373,178 + +0.1
1,373,524 + AMB_RS06460 0.52 -0.7
1,373,754 + +0.9
1,374,051 + AMB_RS06465 0.20 -1.5
1,374,051 + AMB_RS06465 0.20 +1.2
1,374,052 - AMB_RS06465 0.20 +0.2
1,374,052 - AMB_RS06465 0.20 -2.0
1,374,052 - AMB_RS06465 0.20 -0.5
1,374,264 + AMB_RS06465 0.44 +0.0
1,374,544 + AMB_RS06465 0.75 -0.7
1,374,547 - AMB_RS06465 0.75 -1.2
1,374,774 + +0.2
1,374,777 - -1.4
1,374,896 + AMB_RS06470 0.13 -1.0
1,374,897 - AMB_RS06470 0.13 +0.3
1,374,925 + AMB_RS06470 0.17 -0.5
1,374,926 - AMB_RS06470 0.17 +0.6
1,374,969 - AMB_RS06470 0.23 -0.1
1,375,092 - AMB_RS06470 0.42 -1.3
1,375,106 + AMB_RS06470 0.44 -1.8
1,375,358 + AMB_RS06470 0.81 +0.2
1,375,358 + AMB_RS06470 0.81 -0.7
1,375,358 + AMB_RS06470 0.81 -0.3
1,375,358 + AMB_RS06470 0.81 +0.6
1,375,358 + AMB_RS06470 0.81 +0.4
1,375,359 - AMB_RS06470 0.81 +0.6
1,375,359 - AMB_RS06470 0.81 -0.3
1,375,359 - AMB_RS06470 0.81 -0.9
1,375,359 - AMB_RS06470 0.81 -1.8
1,375,359 - AMB_RS06470 0.81 +0.3
1,375,359 - AMB_RS06470 0.81 -0.1
1,375,364 + AMB_RS06470 0.81 -1.9
1,375,364 + AMB_RS06470 0.81 +0.2
1,375,364 + AMB_RS06470 0.81 -0.1
1,375,364 + AMB_RS06470 0.81 -0.5
1,375,364 + AMB_RS06470 0.81 -3.0
1,375,365 - AMB_RS06470 0.82 -0.4
1,375,365 - AMB_RS06470 0.82 -0.1
1,375,367 - AMB_RS06470 0.82 +1.3
1,375,406 + AMB_RS06470 0.88 +0.8
1,375,406 + AMB_RS06470 0.88 -0.1
1,375,406 + AMB_RS06470 0.88 -0.7
1,375,406 + AMB_RS06470 0.88 -1.1
1,375,406 + AMB_RS06470 0.88 -0.4
1,375,406 + AMB_RS06470 0.88 -0.3
1,375,407 - AMB_RS06470 0.88 -0.1
1,375,558 + -1.3
1,375,558 + -0.5
1,375,558 + -0.3
1,375,558 + +0.1
1,375,558 + -0.2
1,375,559 - +0.7
1,375,559 - -0.3

Or see this region's nucleotide sequence