Experiment: without_iron1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04260 and AMB_RS04265 are separated by 4 nucleotides AMB_RS04265 and AMB_RS04270 are separated by 79 nucleotides AMB_RS04270 and AMB_RS04275 are separated by 1 nucleotides
AMB_RS04260: AMB_RS04260 - signal peptidase II, at 895,414 to 895,932
_RS04260
AMB_RS04265: AMB_RS04265 - DUF3035 domain-containing protein, at 895,937 to 896,524
_RS04265
AMB_RS04270: AMB_RS04270 - insulinase family protein, at 896,604 to 898,001
_RS04270
AMB_RS04275: AMB_RS04275 - insulinase family protein, at 898,003 to 899,415
_RS04275
Position (kb) 896
897
898
899 Strain fitness (log2 ratio) -1
0
1 at 895.923 kb on + strand at 895.930 kb on + strand at 896.523 kb on - strand at 896.600 kb on + strand at 896.601 kb on - strand at 896.769 kb on + strand, within AMB_RS04270 at 897.123 kb on + strand, within AMB_RS04270 at 897.123 kb on + strand, within AMB_RS04270 at 897.124 kb on - strand, within AMB_RS04270 at 897.295 kb on - strand, within AMB_RS04270 at 897.295 kb on - strand, within AMB_RS04270 at 897.298 kb on - strand, within AMB_RS04270 at 897.420 kb on + strand, within AMB_RS04270 at 897.463 kb on - strand, within AMB_RS04270 at 897.516 kb on + strand, within AMB_RS04270 at 897.517 kb on - strand, within AMB_RS04270 at 897.567 kb on + strand, within AMB_RS04270 at 898.031 kb on + strand at 898.032 kb on - strand at 898.963 kb on + strand, within AMB_RS04275 at 898.963 kb on + strand, within AMB_RS04275
Per-strain Table
Position Strand Gene LocusTag Fraction without_iron1 remove 895,923 + -1.1 895,930 + -1.3 896,523 - -0.3 896,600 + -0.4 896,601 - -1.0 896,769 + AMB_RS04270 0.12 +0.7 897,123 + AMB_RS04270 0.37 -0.0 897,123 + AMB_RS04270 0.37 +1.0 897,124 - AMB_RS04270 0.37 +0.0 897,295 - AMB_RS04270 0.49 +0.0 897,295 - AMB_RS04270 0.49 +0.6 897,298 - AMB_RS04270 0.50 +0.4 897,420 + AMB_RS04270 0.58 +1.3 897,463 - AMB_RS04270 0.61 +0.2 897,516 + AMB_RS04270 0.65 +0.3 897,517 - AMB_RS04270 0.65 -0.3 897,567 + AMB_RS04270 0.69 +0.6 898,031 + -0.3 898,032 - +0.2 898,963 + AMB_RS04275 0.68 -0.2 898,963 + AMB_RS04275 0.68 -0.1
Or see this region's nucleotide sequence