Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03510

Experiment: without_iron1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03505 and AMB_RS03510 are separated by 455 nucleotidesAMB_RS03510 and AMB_RS03515 are separated by 186 nucleotides AMB_RS03505: AMB_RS03505 - type I DNA topoisomerase, at 733,084 to 735,774 _RS03505 AMB_RS03510: AMB_RS03510 - flagellin-like protein, at 736,230 to 737,816 _RS03510 AMB_RS03515: AMB_RS03515 - DUF115 domain-containing protein, at 738,003 to 740,003 _RS03515 Position (kb) 736 737 738Strain fitness (log2 ratio) -3 -2 -1 0 1at 735.772 kb on + strandat 735.773 kb on - strandat 735.919 kb on - strandat 736.105 kb on - strandat 736.105 kb on - strandat 736.177 kb on + strandat 736.177 kb on + strandat 736.177 kb on + strandat 736.177 kb on + strandat 736.177 kb on + strandat 736.178 kb on - strandat 736.213 kb on + strandat 736.213 kb on + strandat 736.213 kb on + strandat 736.213 kb on + strandat 736.214 kb on - strandat 736.229 kb on + strandat 736.230 kb on - strandat 736.248 kb on - strandat 736.248 kb on - strandat 736.248 kb on - strandat 736.833 kb on + strand, within AMB_RS03510at 736.834 kb on - strand, within AMB_RS03510at 736.869 kb on + strand, within AMB_RS03510at 736.870 kb on - strand, within AMB_RS03510at 736.881 kb on + strand, within AMB_RS03510at 736.912 kb on - strand, within AMB_RS03510at 737.185 kb on - strand, within AMB_RS03510at 737.185 kb on - strand, within AMB_RS03510at 737.186 kb on + strand, within AMB_RS03510at 737.187 kb on - strand, within AMB_RS03510at 737.415 kb on + strand, within AMB_RS03510at 737.416 kb on - strand, within AMB_RS03510at 737.430 kb on + strand, within AMB_RS03510at 737.430 kb on + strand, within AMB_RS03510at 737.433 kb on + strand, within AMB_RS03510at 737.433 kb on + strand, within AMB_RS03510at 737.460 kb on + strand, within AMB_RS03510at 737.461 kb on - strand, within AMB_RS03510at 737.461 kb on - strand, within AMB_RS03510at 737.497 kb on - strand, within AMB_RS03510at 737.511 kb on + strand, within AMB_RS03510at 737.512 kb on - strand, within AMB_RS03510at 737.512 kb on - strand, within AMB_RS03510at 737.512 kb on - strand, within AMB_RS03510at 737.655 kb on + strand, within AMB_RS03510at 737.656 kb on - strand, within AMB_RS03510at 737.656 kb on - strand, within AMB_RS03510at 737.656 kb on - strand, within AMB_RS03510at 737.814 kb on + strandat 737.814 kb on + strandat 737.815 kb on - strandat 737.829 kb on - strandat 737.829 kb on - strandat 737.829 kb on - strandat 737.975 kb on - strandat 737.975 kb on - strandat 738.171 kb on + strandat 738.171 kb on + strandat 738.172 kb on - strandat 738.297 kb on + strand, within AMB_RS03515at 738.297 kb on + strand, within AMB_RS03515at 738.297 kb on + strand, within AMB_RS03515at 738.297 kb on + strand, within AMB_RS03515at 738.298 kb on - strand, within AMB_RS03515at 738.298 kb on - strand, within AMB_RS03515at 738.400 kb on - strand, within AMB_RS03515at 738.406 kb on + strand, within AMB_RS03515at 738.406 kb on + strand, within AMB_RS03515at 738.407 kb on - strand, within AMB_RS03515at 738.446 kb on + strand, within AMB_RS03515at 738.446 kb on + strand, within AMB_RS03515at 738.446 kb on + strand, within AMB_RS03515at 738.446 kb on + strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.475 kb on - strand, within AMB_RS03515at 738.475 kb on - strand, within AMB_RS03515at 738.648 kb on + strand, within AMB_RS03515at 738.648 kb on + strand, within AMB_RS03515at 738.648 kb on + strand, within AMB_RS03515at 738.648 kb on + strand, within AMB_RS03515at 738.648 kb on + strand, within AMB_RS03515at 738.648 kb on + strand, within AMB_RS03515at 738.648 kb on + strand, within AMB_RS03515at 738.649 kb on - strand, within AMB_RS03515at 738.649 kb on - strand, within AMB_RS03515at 738.649 kb on - strand, within AMB_RS03515at 738.649 kb on - strand, within AMB_RS03515at 738.650 kb on + strand, within AMB_RS03515at 738.650 kb on + strand, within AMB_RS03515at 738.650 kb on + strand, within AMB_RS03515at 738.651 kb on - strand, within AMB_RS03515at 738.651 kb on - strand, within AMB_RS03515at 738.759 kb on + strand, within AMB_RS03515at 738.759 kb on + strand, within AMB_RS03515at 738.759 kb on + strand, within AMB_RS03515at 738.760 kb on - strand, within AMB_RS03515at 738.784 kb on - strand, within AMB_RS03515at 738.784 kb on - strand, within AMB_RS03515

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron1
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735,772 + -0.1
735,773 - -0.5
735,919 - -0.2
736,105 - -0.9
736,105 - -0.5
736,177 + -0.5
736,177 + -0.4
736,177 + +0.6
736,177 + -2.7
736,177 + -0.2
736,178 - -1.4
736,213 + -0.2
736,213 + -1.2
736,213 + -2.5
736,213 + +0.7
736,214 - -0.9
736,229 + -1.2
736,230 - -0.1
736,248 - -0.2
736,248 - -0.4
736,248 - +0.4
736,833 + AMB_RS03510 0.38 -0.7
736,834 - AMB_RS03510 0.38 -1.2
736,869 + AMB_RS03510 0.40 -2.3
736,870 - AMB_RS03510 0.40 +0.2
736,881 + AMB_RS03510 0.41 -0.3
736,912 - AMB_RS03510 0.43 +0.0
737,185 - AMB_RS03510 0.60 -0.5
737,185 - AMB_RS03510 0.60 -1.5
737,186 + AMB_RS03510 0.60 -0.6
737,187 - AMB_RS03510 0.60 -0.9
737,415 + AMB_RS03510 0.75 -1.7
737,416 - AMB_RS03510 0.75 -0.7
737,430 + AMB_RS03510 0.76 -0.4
737,430 + AMB_RS03510 0.76 -0.0
737,433 + AMB_RS03510 0.76 -0.7
737,433 + AMB_RS03510 0.76 -0.5
737,460 + AMB_RS03510 0.78 -1.4
737,461 - AMB_RS03510 0.78 -1.0
737,461 - AMB_RS03510 0.78 -0.9
737,497 - AMB_RS03510 0.80 -0.3
737,511 + AMB_RS03510 0.81 -0.4
737,512 - AMB_RS03510 0.81 +0.3
737,512 - AMB_RS03510 0.81 -0.4
737,512 - AMB_RS03510 0.81 -1.0
737,655 + AMB_RS03510 0.90 -1.5
737,656 - AMB_RS03510 0.90 -1.5
737,656 - AMB_RS03510 0.90 -0.7
737,656 - AMB_RS03510 0.90 +0.3
737,814 + -0.2
737,814 + -3.1
737,815 - -1.2
737,829 - -0.4
737,829 - +0.2
737,829 - +0.3
737,975 - +0.1
737,975 - -0.2
738,171 + -1.0
738,171 + +1.3
738,172 - +0.7
738,297 + AMB_RS03515 0.15 -0.1
738,297 + AMB_RS03515 0.15 -0.2
738,297 + AMB_RS03515 0.15 -0.3
738,297 + AMB_RS03515 0.15 -0.7
738,298 - AMB_RS03515 0.15 -0.0
738,298 - AMB_RS03515 0.15 -0.3
738,400 - AMB_RS03515 0.20 -0.2
738,406 + AMB_RS03515 0.20 -0.1
738,406 + AMB_RS03515 0.20 -0.4
738,407 - AMB_RS03515 0.20 -0.4
738,446 + AMB_RS03515 0.22 -0.8
738,446 + AMB_RS03515 0.22 -0.0
738,446 + AMB_RS03515 0.22 -0.3
738,446 + AMB_RS03515 0.22 +0.5
738,447 - AMB_RS03515 0.22 -0.2
738,447 - AMB_RS03515 0.22 -0.5
738,447 - AMB_RS03515 0.22 +0.0
738,447 - AMB_RS03515 0.22 -0.2
738,447 - AMB_RS03515 0.22 -1.7
738,447 - AMB_RS03515 0.22 +0.3
738,447 - AMB_RS03515 0.22 -1.0
738,447 - AMB_RS03515 0.22 -0.2
738,447 - AMB_RS03515 0.22 -0.2
738,475 - AMB_RS03515 0.24 +1.2
738,475 - AMB_RS03515 0.24 +0.0
738,648 + AMB_RS03515 0.32 -0.1
738,648 + AMB_RS03515 0.32 -0.5
738,648 + AMB_RS03515 0.32 +0.5
738,648 + AMB_RS03515 0.32 -0.6
738,648 + AMB_RS03515 0.32 -0.0
738,648 + AMB_RS03515 0.32 -0.2
738,648 + AMB_RS03515 0.32 -0.3
738,649 - AMB_RS03515 0.32 -1.0
738,649 - AMB_RS03515 0.32 +1.3
738,649 - AMB_RS03515 0.32 -0.2
738,649 - AMB_RS03515 0.32 +0.0
738,650 + AMB_RS03515 0.32 -0.2
738,650 + AMB_RS03515 0.32 +0.4
738,650 + AMB_RS03515 0.32 +1.5
738,651 - AMB_RS03515 0.32 +0.8
738,651 - AMB_RS03515 0.32 +1.1
738,759 + AMB_RS03515 0.38 +0.8
738,759 + AMB_RS03515 0.38 +0.1
738,759 + AMB_RS03515 0.38 +1.2
738,760 - AMB_RS03515 0.38 -1.0
738,784 - AMB_RS03515 0.39 +0.8
738,784 - AMB_RS03515 0.39 -0.3

Or see this region's nucleotide sequence