Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02690

Experiment: without_iron1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02685 and AMB_RS02690 are separated by 11 nucleotidesAMB_RS02690 and AMB_RS02695 are separated by 248 nucleotides AMB_RS02685: AMB_RS02685 - glutamate synthase large subunit, at 557,989 to 562,503 _RS02685 AMB_RS02690: AMB_RS02690 - dihydropyrimidine dehydrogenase subunit A, at 562,515 to 563,930 _RS02690 AMB_RS02695: AMB_RS02695 - undecaprenyl-diphosphatase 1, at 564,179 to 564,982 _RS02695 Position (kb) 562 563 564Strain fitness (log2 ratio) -3 -2 -1 0 1at 561.792 kb on - strand, within AMB_RS02685at 561.792 kb on - strand, within AMB_RS02685at 561.792 kb on - strand, within AMB_RS02685at 561.803 kb on + strand, within AMB_RS02685at 561.803 kb on + strand, within AMB_RS02685at 561.803 kb on + strand, within AMB_RS02685at 561.803 kb on + strand, within AMB_RS02685at 561.803 kb on + strand, within AMB_RS02685at 561.804 kb on - strand, within AMB_RS02685at 561.804 kb on - strand, within AMB_RS02685at 561.849 kb on - strand, within AMB_RS02685at 561.887 kb on + strand, within AMB_RS02685at 561.887 kb on + strand, within AMB_RS02685at 561.887 kb on + strand, within AMB_RS02685at 561.887 kb on + strand, within AMB_RS02685at 561.887 kb on + strand, within AMB_RS02685at 561.888 kb on - strand, within AMB_RS02685at 561.920 kb on + strand, within AMB_RS02685at 561.920 kb on + strand, within AMB_RS02685at 561.920 kb on + strand, within AMB_RS02685at 561.920 kb on + strand, within AMB_RS02685at 561.920 kb on + strand, within AMB_RS02685at 561.920 kb on + strand, within AMB_RS02685at 561.921 kb on - strand, within AMB_RS02685at 561.921 kb on - strand, within AMB_RS02685at 561.921 kb on - strand, within AMB_RS02685at 562.109 kb on + strandat 562.109 kb on + strandat 562.109 kb on + strandat 562.109 kb on + strandat 562.110 kb on - strandat 562.110 kb on - strandat 562.110 kb on - strandat 562.110 kb on - strandat 562.110 kb on - strandat 562.481 kb on + strandat 562.481 kb on + strandat 562.482 kb on - strandat 562.516 kb on + strandat 562.517 kb on - strandat 562.517 kb on - strandat 562.550 kb on - strandat 563.140 kb on + strand, within AMB_RS02690at 563.141 kb on - strand, within AMB_RS02690at 563.203 kb on + strand, within AMB_RS02690at 563.203 kb on + strand, within AMB_RS02690at 563.203 kb on + strand, within AMB_RS02690at 563.203 kb on + strand, within AMB_RS02690at 563.203 kb on + strand, within AMB_RS02690at 563.204 kb on - strand, within AMB_RS02690at 563.204 kb on - strand, within AMB_RS02690at 563.368 kb on + strand, within AMB_RS02690at 563.369 kb on - strand, within AMB_RS02690at 563.369 kb on - strand, within AMB_RS02690at 563.690 kb on - strand, within AMB_RS02690at 563.690 kb on - strand, within AMB_RS02690at 564.144 kb on + strandat 564.144 kb on + strandat 564.144 kb on + strandat 564.145 kb on - strandat 564.145 kb on - strandat 564.145 kb on - strandat 564.145 kb on - strandat 564.145 kb on - strandat 564.189 kb on + strandat 564.189 kb on + strandat 564.190 kb on - strandat 564.351 kb on - strand, within AMB_RS02695at 564.416 kb on + strand, within AMB_RS02695at 564.646 kb on - strand, within AMB_RS02695at 564.905 kb on - strandat 564.905 kb on - strandat 564.905 kb on - strandat 564.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron1
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561,792 - AMB_RS02685 0.84 +0.5
561,792 - AMB_RS02685 0.84 +0.3
561,792 - AMB_RS02685 0.84 -0.9
561,803 + AMB_RS02685 0.84 -0.4
561,803 + AMB_RS02685 0.84 -1.0
561,803 + AMB_RS02685 0.84 -1.3
561,803 + AMB_RS02685 0.84 -0.5
561,803 + AMB_RS02685 0.84 -2.9
561,804 - AMB_RS02685 0.84 -2.8
561,804 - AMB_RS02685 0.84 +1.1
561,849 - AMB_RS02685 0.85 -1.0
561,887 + AMB_RS02685 0.86 -0.7
561,887 + AMB_RS02685 0.86 -0.3
561,887 + AMB_RS02685 0.86 -1.1
561,887 + AMB_RS02685 0.86 +0.2
561,887 + AMB_RS02685 0.86 -1.2
561,888 - AMB_RS02685 0.86 -1.4
561,920 + AMB_RS02685 0.87 +1.2
561,920 + AMB_RS02685 0.87 -1.1
561,920 + AMB_RS02685 0.87 -0.8
561,920 + AMB_RS02685 0.87 -1.8
561,920 + AMB_RS02685 0.87 +1.3
561,920 + AMB_RS02685 0.87 -1.2
561,921 - AMB_RS02685 0.87 -1.3
561,921 - AMB_RS02685 0.87 -0.8
561,921 - AMB_RS02685 0.87 +0.3
562,109 + -0.9
562,109 + -1.0
562,109 + +0.6
562,109 + -0.9
562,110 - +0.2
562,110 - -0.7
562,110 - -1.2
562,110 - -0.9
562,110 - -1.9
562,481 + -0.3
562,481 + -0.7
562,482 - -1.0
562,516 + +1.0
562,517 - -0.3
562,517 - -0.3
562,550 - -1.0
563,140 + AMB_RS02690 0.44 -0.5
563,141 - AMB_RS02690 0.44 +1.0
563,203 + AMB_RS02690 0.49 +0.3
563,203 + AMB_RS02690 0.49 -0.5
563,203 + AMB_RS02690 0.49 +0.3
563,203 + AMB_RS02690 0.49 -0.9
563,203 + AMB_RS02690 0.49 -2.5
563,204 - AMB_RS02690 0.49 -1.0
563,204 - AMB_RS02690 0.49 -0.1
563,368 + AMB_RS02690 0.60 -1.5
563,369 - AMB_RS02690 0.60 -2.0
563,369 - AMB_RS02690 0.60 +0.7
563,690 - AMB_RS02690 0.83 -1.2
563,690 - AMB_RS02690 0.83 -0.5
564,144 + -0.2
564,144 + +0.1
564,144 + -0.3
564,145 - -1.4
564,145 - -0.1
564,145 - +0.4
564,145 - +0.7
564,145 - +0.3
564,189 + -0.7
564,189 + +0.3
564,190 - -0.9
564,351 - AMB_RS02695 0.21 -0.6
564,416 + AMB_RS02695 0.29 -0.3
564,646 - AMB_RS02695 0.58 -0.3
564,905 - +0.3
564,905 - -0.9
564,905 - +0.5
564,905 - +0.3

Or see this region's nucleotide sequence