Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01790

Experiment: without_iron1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01780 and AMB_RS01785 are separated by 29 nucleotidesAMB_RS01785 and AMB_RS01790 overlap by 29 nucleotidesAMB_RS01790 and AMB_RS01795 are separated by 16 nucleotidesAMB_RS01795 and AMB_RS01800 are separated by 85 nucleotidesAMB_RS01800 and AMB_RS01805 overlap by 4 nucleotides AMB_RS01780: AMB_RS01780 - sigma-70 family RNA polymerase sigma factor, at 386,388 to 386,951 _RS01780 AMB_RS01785: AMB_RS01785 - hypothetical protein, at 386,981 to 387,376 _RS01785 AMB_RS01790: AMB_RS01790 - oxidoreductase, at 387,348 to 388,103 _RS01790 AMB_RS01795: AMB_RS01795 - DUF669 domain-containing protein, at 388,120 to 388,626 _RS01795 AMB_RS01800: AMB_RS01800 - hypothetical protein, at 388,712 to 389,089 _RS01800 AMB_RS01805: AMB_RS01805 - hypothetical protein, at 389,086 to 390,015 _RS01805 Position (kb) 387 388 389Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 386.493 kb on - strand, within AMB_RS01780at 386.579 kb on + strand, within AMB_RS01780at 386.580 kb on - strand, within AMB_RS01780at 386.580 kb on - strand, within AMB_RS01780at 386.580 kb on - strand, within AMB_RS01780at 386.946 kb on - strandat 386.946 kb on - strandat 386.946 kb on - strandat 386.946 kb on - strandat 386.946 kb on - strandat 386.946 kb on - strandat 387.044 kb on - strand, within AMB_RS01785at 387.090 kb on - strand, within AMB_RS01785at 387.090 kb on - strand, within AMB_RS01785at 387.090 kb on - strand, within AMB_RS01785at 387.090 kb on - strand, within AMB_RS01785at 387.090 kb on - strand, within AMB_RS01785at 387.252 kb on - strand, within AMB_RS01785at 387.252 kb on - strand, within AMB_RS01785at 387.252 kb on - strand, within AMB_RS01785at 387.252 kb on - strand, within AMB_RS01785at 387.252 kb on - strand, within AMB_RS01785at 387.330 kb on - strand, within AMB_RS01785at 387.330 kb on - strand, within AMB_RS01785at 387.347 kb on - strandat 387.565 kb on - strand, within AMB_RS01790at 387.565 kb on - strand, within AMB_RS01790at 387.565 kb on - strand, within AMB_RS01790at 387.565 kb on - strand, within AMB_RS01790at 387.565 kb on - strand, within AMB_RS01790at 387.693 kb on + strand, within AMB_RS01790at 387.693 kb on + strand, within AMB_RS01790at 387.694 kb on - strand, within AMB_RS01790at 387.694 kb on - strand, within AMB_RS01790at 387.694 kb on - strand, within AMB_RS01790at 387.724 kb on - strand, within AMB_RS01790at 387.724 kb on - strand, within AMB_RS01790at 387.724 kb on - strand, within AMB_RS01790at 387.725 kb on + strand, within AMB_RS01790at 387.725 kb on + strand, within AMB_RS01790at 387.726 kb on - strand, within AMB_RS01790at 387.726 kb on - strand, within AMB_RS01790at 387.726 kb on - strand, within AMB_RS01790at 387.726 kb on - strand, within AMB_RS01790at 387.726 kb on - strand, within AMB_RS01790at 387.726 kb on - strand, within AMB_RS01790at 387.786 kb on - strand, within AMB_RS01790at 387.826 kb on - strand, within AMB_RS01790at 387.826 kb on - strand, within AMB_RS01790at 387.826 kb on - strand, within AMB_RS01790at 387.835 kb on - strand, within AMB_RS01790at 387.835 kb on - strand, within AMB_RS01790at 387.835 kb on - strand, within AMB_RS01790at 387.872 kb on - strand, within AMB_RS01790at 387.988 kb on - strand, within AMB_RS01790at 388.102 kb on - strandat 388.195 kb on + strand, within AMB_RS01795at 388.195 kb on + strand, within AMB_RS01795at 388.195 kb on + strand, within AMB_RS01795at 388.196 kb on - strand, within AMB_RS01795at 388.196 kb on - strand, within AMB_RS01795at 388.196 kb on - strand, within AMB_RS01795at 388.196 kb on - strand, within AMB_RS01795at 388.252 kb on + strand, within AMB_RS01795at 388.253 kb on - strand, within AMB_RS01795at 388.253 kb on - strand, within AMB_RS01795at 388.253 kb on - strand, within AMB_RS01795at 388.728 kb on + strandat 388.728 kb on + strandat 388.728 kb on + strandat 388.728 kb on + strandat 388.728 kb on + strandat 388.728 kb on + strandat 388.728 kb on + strandat 388.729 kb on - strandat 388.729 kb on - strandat 388.729 kb on - strandat 388.729 kb on - strandat 388.843 kb on + strand, within AMB_RS01800at 388.843 kb on + strand, within AMB_RS01800at 388.843 kb on + strand, within AMB_RS01800at 388.844 kb on - strand, within AMB_RS01800at 388.844 kb on - strand, within AMB_RS01800at 388.844 kb on - strand, within AMB_RS01800at 388.887 kb on - strand, within AMB_RS01800at 389.015 kb on + strand, within AMB_RS01800at 389.016 kb on - strand, within AMB_RS01800at 389.085 kb on + strandat 389.085 kb on + strandat 389.086 kb on - strandat 389.086 kb on - strandat 389.086 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron1
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386,493 - AMB_RS01780 0.19 -2.5
386,579 + AMB_RS01780 0.34 +0.2
386,580 - AMB_RS01780 0.34 +0.2
386,580 - AMB_RS01780 0.34 +0.2
386,580 - AMB_RS01780 0.34 +1.3
386,946 - +0.3
386,946 - -0.3
386,946 - -1.7
386,946 - +0.8
386,946 - +0.5
386,946 - +0.5
387,044 - AMB_RS01785 0.16 -1.1
387,090 - AMB_RS01785 0.28 +1.9
387,090 - AMB_RS01785 0.28 -0.2
387,090 - AMB_RS01785 0.28 -0.2
387,090 - AMB_RS01785 0.28 +0.3
387,090 - AMB_RS01785 0.28 +1.9
387,252 - AMB_RS01785 0.68 +0.2
387,252 - AMB_RS01785 0.68 -0.3
387,252 - AMB_RS01785 0.68 +0.1
387,252 - AMB_RS01785 0.68 +0.3
387,252 - AMB_RS01785 0.68 -0.9
387,330 - AMB_RS01785 0.88 -1.4
387,330 - AMB_RS01785 0.88 -0.3
387,347 - -0.4
387,565 - AMB_RS01790 0.29 -0.5
387,565 - AMB_RS01790 0.29 -0.1
387,565 - AMB_RS01790 0.29 +0.5
387,565 - AMB_RS01790 0.29 -0.5
387,565 - AMB_RS01790 0.29 -0.1
387,693 + AMB_RS01790 0.46 +0.3
387,693 + AMB_RS01790 0.46 -0.3
387,694 - AMB_RS01790 0.46 -0.1
387,694 - AMB_RS01790 0.46 +0.1
387,694 - AMB_RS01790 0.46 -0.5
387,724 - AMB_RS01790 0.50 -0.4
387,724 - AMB_RS01790 0.50 -0.9
387,724 - AMB_RS01790 0.50 +0.1
387,725 + AMB_RS01790 0.50 -1.3
387,725 + AMB_RS01790 0.50 -1.0
387,726 - AMB_RS01790 0.50 +0.1
387,726 - AMB_RS01790 0.50 -0.4
387,726 - AMB_RS01790 0.50 -1.2
387,726 - AMB_RS01790 0.50 -0.2
387,726 - AMB_RS01790 0.50 +0.2
387,726 - AMB_RS01790 0.50 -0.3
387,786 - AMB_RS01790 0.58 -1.1
387,826 - AMB_RS01790 0.63 +0.3
387,826 - AMB_RS01790 0.63 -0.3
387,826 - AMB_RS01790 0.63 +0.1
387,835 - AMB_RS01790 0.64 -1.3
387,835 - AMB_RS01790 0.64 -0.5
387,835 - AMB_RS01790 0.64 -0.5
387,872 - AMB_RS01790 0.69 +1.5
387,988 - AMB_RS01790 0.85 -0.4
388,102 - +0.6
388,195 + AMB_RS01795 0.15 -0.2
388,195 + AMB_RS01795 0.15 +0.1
388,195 + AMB_RS01795 0.15 -0.9
388,196 - AMB_RS01795 0.15 -0.1
388,196 - AMB_RS01795 0.15 -0.4
388,196 - AMB_RS01795 0.15 -0.2
388,196 - AMB_RS01795 0.15 -1.1
388,252 + AMB_RS01795 0.26 -0.5
388,253 - AMB_RS01795 0.26 -0.3
388,253 - AMB_RS01795 0.26 -3.5
388,253 - AMB_RS01795 0.26 -0.2
388,728 + +0.6
388,728 + -0.5
388,728 + +0.5
388,728 + +1.0
388,728 + +0.3
388,728 + -0.0
388,728 + +0.0
388,729 - +0.2
388,729 - +0.0
388,729 - -0.5
388,729 - +0.2
388,843 + AMB_RS01800 0.35 -0.2
388,843 + AMB_RS01800 0.35 +1.2
388,843 + AMB_RS01800 0.35 +0.3
388,844 - AMB_RS01800 0.35 -2.5
388,844 - AMB_RS01800 0.35 -0.1
388,844 - AMB_RS01800 0.35 +1.8
388,887 - AMB_RS01800 0.46 -0.9
389,015 + AMB_RS01800 0.80 -0.1
389,016 - AMB_RS01800 0.80 +0.3
389,085 + +0.6
389,085 + -0.6
389,086 - +0.5
389,086 - +0.0
389,086 - +0.2

Or see this region's nucleotide sequence