Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01390

Experiment: without_iron1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01385 and AMB_RS01390 overlap by 11 nucleotidesAMB_RS01390 and AMB_RS01395 are separated by 476 nucleotides AMB_RS01385: AMB_RS01385 - HAMP domain-containing protein, at 304,480 to 306,093 _RS01385 AMB_RS01390: AMB_RS01390 - DNA-binding response regulator, at 306,083 to 306,778 _RS01390 AMB_RS01395: AMB_RS01395 - energy-coupling factor ABC transporter permease, at 307,255 to 307,905 _RS01395 Position (kb) 306 307Strain fitness (log2 ratio) -2 -1 0 1at 306.876 kb on - strandat 306.876 kb on - strandat 306.876 kb on - strandat 306.942 kb on + strandat 306.942 kb on + strandat 306.943 kb on - strandat 306.944 kb on + strandat 306.945 kb on - strandat 307.051 kb on + strandat 307.052 kb on - strandat 307.109 kb on + strandat 307.226 kb on - strandat 307.226 kb on - strandat 307.251 kb on + strandat 307.251 kb on + strandat 307.252 kb on - strandat 307.252 kb on - strandat 307.252 kb on - strandat 307.260 kb on + strandat 307.260 kb on + strandat 307.260 kb on + strandat 307.260 kb on + strandat 307.260 kb on + strandat 307.260 kb on + strandat 307.261 kb on - strandat 307.261 kb on - strandat 307.261 kb on - strandat 307.386 kb on + strand, within AMB_RS01395at 307.624 kb on + strand, within AMB_RS01395at 307.624 kb on + strand, within AMB_RS01395at 307.625 kb on - strand, within AMB_RS01395at 307.625 kb on - strand, within AMB_RS01395at 307.711 kb on + strand, within AMB_RS01395at 307.711 kb on + strand, within AMB_RS01395at 307.711 kb on + strand, within AMB_RS01395at 307.711 kb on + strand, within AMB_RS01395at 307.711 kb on + strand, within AMB_RS01395at 307.711 kb on + strand, within AMB_RS01395at 307.711 kb on + strand, within AMB_RS01395at 307.712 kb on - strand, within AMB_RS01395at 307.712 kb on - strand, within AMB_RS01395at 307.712 kb on - strand, within AMB_RS01395at 307.712 kb on - strand, within AMB_RS01395at 307.712 kb on - strand, within AMB_RS01395at 307.712 kb on - strand, within AMB_RS01395at 307.712 kb on - strand, within AMB_RS01395at 307.712 kb on - strand, within AMB_RS01395

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron1
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306,876 - -0.6
306,876 - -1.2
306,876 - -0.1
306,942 + -1.0
306,942 + +0.3
306,943 - -0.1
306,944 + -0.0
306,945 - -0.8
307,051 + +0.1
307,052 - +0.9
307,109 + -0.0
307,226 - -0.3
307,226 - -2.4
307,251 + +0.1
307,251 + -0.3
307,252 - -0.1
307,252 - -0.5
307,252 - +0.0
307,260 + +0.3
307,260 + -0.2
307,260 + +1.1
307,260 + +0.2
307,260 + +0.2
307,260 + -0.1
307,261 - -0.7
307,261 - -0.0
307,261 - +0.3
307,386 + AMB_RS01395 0.20 -0.2
307,624 + AMB_RS01395 0.57 -0.2
307,624 + AMB_RS01395 0.57 -0.3
307,625 - AMB_RS01395 0.57 +0.5
307,625 - AMB_RS01395 0.57 +0.3
307,711 + AMB_RS01395 0.70 +0.2
307,711 + AMB_RS01395 0.70 -2.7
307,711 + AMB_RS01395 0.70 +0.2
307,711 + AMB_RS01395 0.70 -0.9
307,711 + AMB_RS01395 0.70 -0.1
307,711 + AMB_RS01395 0.70 -1.3
307,711 + AMB_RS01395 0.70 +1.0
307,712 - AMB_RS01395 0.70 -0.2
307,712 - AMB_RS01395 0.70 +0.1
307,712 - AMB_RS01395 0.70 -0.2
307,712 - AMB_RS01395 0.70 +0.5
307,712 - AMB_RS01395 0.70 +0.1
307,712 - AMB_RS01395 0.70 -1.3
307,712 - AMB_RS01395 0.70 +0.4
307,712 - AMB_RS01395 0.70 +0.2

Or see this region's nucleotide sequence