Experiment: without_iron1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01285 and AMB_RS01290 overlap by 4 nucleotides AMB_RS01290 and AMB_RS01295 are separated by 5 nucleotides AMB_RS01295 and AMB_RS01300 overlap by 1 nucleotides
AMB_RS01285: AMB_RS01285 - dehydrogenase, at 284,369 to 285,307
_RS01285
AMB_RS01290: AMB_RS01290 - 2-pyrone-4,6-dicarboxylate hydrolase, at 285,304 to 286,221
_RS01290
AMB_RS01295: AMB_RS01295 - gfo/Idh/MocA family oxidoreductase, at 286,227 to 287,189
_RS01295
AMB_RS01300: AMB_RS01300 - aldo/keto reductase, at 287,189 to 288,178
_RS01300
Position (kb) 286
287
288 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 285.340 kb on + strand at 285.340 kb on + strand at 285.340 kb on + strand at 285.341 kb on - strand at 285.341 kb on - strand at 285.341 kb on - strand at 285.341 kb on - strand at 285.448 kb on + strand, within AMB_RS01290 at 285.448 kb on + strand, within AMB_RS01290 at 285.448 kb on + strand, within AMB_RS01290 at 285.448 kb on + strand, within AMB_RS01290 at 285.448 kb on + strand, within AMB_RS01290 at 285.448 kb on + strand, within AMB_RS01290 at 285.448 kb on + strand, within AMB_RS01290 at 285.449 kb on - strand, within AMB_RS01290 at 285.449 kb on - strand, within AMB_RS01290 at 285.449 kb on - strand, within AMB_RS01290 at 285.449 kb on - strand, within AMB_RS01290 at 285.449 kb on - strand, within AMB_RS01290 at 285.449 kb on - strand, within AMB_RS01290 at 285.449 kb on - strand, within AMB_RS01290 at 285.449 kb on - strand, within AMB_RS01290 at 285.687 kb on + strand, within AMB_RS01290 at 285.687 kb on + strand, within AMB_RS01290 at 285.687 kb on + strand, within AMB_RS01290 at 285.688 kb on - strand, within AMB_RS01290 at 285.688 kb on - strand, within AMB_RS01290 at 285.772 kb on + strand, within AMB_RS01290 at 285.773 kb on - strand, within AMB_RS01290 at 285.846 kb on + strand, within AMB_RS01290 at 285.846 kb on + strand, within AMB_RS01290 at 286.140 kb on + strand at 286.198 kb on + strand at 286.198 kb on + strand at 286.199 kb on - strand at 286.199 kb on - strand at 286.199 kb on - strand at 286.372 kb on - strand, within AMB_RS01295 at 286.561 kb on + strand, within AMB_RS01295 at 286.562 kb on - strand, within AMB_RS01295 at 286.686 kb on + strand, within AMB_RS01295 at 286.686 kb on + strand, within AMB_RS01295 at 286.687 kb on - strand, within AMB_RS01295 at 286.956 kb on + strand, within AMB_RS01295 at 286.957 kb on - strand, within AMB_RS01295 at 286.957 kb on - strand, within AMB_RS01295 at 286.977 kb on + strand, within AMB_RS01295 at 286.977 kb on + strand, within AMB_RS01295 at 286.977 kb on + strand, within AMB_RS01295 at 286.977 kb on + strand, within AMB_RS01295 at 286.977 kb on + strand, within AMB_RS01295 at 286.977 kb on + strand, within AMB_RS01295 at 286.978 kb on - strand, within AMB_RS01295 at 286.978 kb on - strand, within AMB_RS01295 at 286.978 kb on - strand, within AMB_RS01295 at 286.978 kb on - strand, within AMB_RS01295 at 286.978 kb on - strand, within AMB_RS01295 at 286.978 kb on - strand, within AMB_RS01295 at 286.978 kb on - strand, within AMB_RS01295 at 286.978 kb on - strand, within AMB_RS01295 at 286.978 kb on - strand, within AMB_RS01295 at 286.978 kb on - strand, within AMB_RS01295 at 286.990 kb on - strand, within AMB_RS01295 at 287.143 kb on - strand at 287.215 kb on + strand at 287.215 kb on + strand at 287.216 kb on - strand at 287.261 kb on + strand at 287.262 kb on - strand at 287.351 kb on + strand, within AMB_RS01300 at 287.351 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.541 kb on - strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.544 kb on - strand, within AMB_RS01300 at 287.544 kb on - strand, within AMB_RS01300 at 287.544 kb on - strand, within AMB_RS01300 at 287.709 kb on - strand, within AMB_RS01300 at 287.709 kb on - strand, within AMB_RS01300 at 287.709 kb on - strand, within AMB_RS01300 at 287.891 kb on + strand, within AMB_RS01300 at 287.891 kb on + strand, within AMB_RS01300 at 287.891 kb on + strand, within AMB_RS01300 at 287.891 kb on + strand, within AMB_RS01300 at 287.891 kb on + strand, within AMB_RS01300 at 287.891 kb on + strand, within AMB_RS01300 at 287.891 kb on + strand, within AMB_RS01300 at 287.892 kb on - strand, within AMB_RS01300 at 288.134 kb on + strand at 288.134 kb on + strand at 288.134 kb on + strand at 288.134 kb on + strand at 288.135 kb on - strand at 288.176 kb on + strand at 288.176 kb on + strand at 288.176 kb on + strand at 288.176 kb on + strand at 288.177 kb on - strand at 288.188 kb on + strand at 288.188 kb on + strand at 288.188 kb on + strand at 288.188 kb on + strand at 288.188 kb on + strand at 288.189 kb on - strand at 288.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction without_iron1 remove 285,340 + -0.5 285,340 + +0.0 285,340 + +1.0 285,341 - -1.9 285,341 - +0.1 285,341 - -0.3 285,341 - -2.1 285,448 + AMB_RS01290 0.16 +0.0 285,448 + AMB_RS01290 0.16 -0.3 285,448 + AMB_RS01290 0.16 -1.1 285,448 + AMB_RS01290 0.16 -0.3 285,448 + AMB_RS01290 0.16 +0.1 285,448 + AMB_RS01290 0.16 -0.1 285,448 + AMB_RS01290 0.16 +0.1 285,449 - AMB_RS01290 0.16 -1.2 285,449 - AMB_RS01290 0.16 -0.3 285,449 - AMB_RS01290 0.16 +1.0 285,449 - AMB_RS01290 0.16 +0.3 285,449 - AMB_RS01290 0.16 -0.3 285,449 - AMB_RS01290 0.16 -0.0 285,449 - AMB_RS01290 0.16 -1.1 285,449 - AMB_RS01290 0.16 -0.0 285,687 + AMB_RS01290 0.42 -0.1 285,687 + AMB_RS01290 0.42 -0.3 285,687 + AMB_RS01290 0.42 -0.7 285,688 - AMB_RS01290 0.42 -0.3 285,688 - AMB_RS01290 0.42 -0.6 285,772 + AMB_RS01290 0.51 -0.7 285,773 - AMB_RS01290 0.51 -0.7 285,846 + AMB_RS01290 0.59 -0.9 285,846 + AMB_RS01290 0.59 -2.6 286,140 + -2.2 286,198 + -2.2 286,198 + -0.6 286,199 - -0.0 286,199 - -0.1 286,199 - -0.2 286,372 - AMB_RS01295 0.15 -0.4 286,561 + AMB_RS01295 0.35 -1.2 286,562 - AMB_RS01295 0.35 -0.8 286,686 + AMB_RS01295 0.48 -1.0 286,686 + AMB_RS01295 0.48 -1.5 286,687 - AMB_RS01295 0.48 -2.7 286,956 + AMB_RS01295 0.76 -0.7 286,957 - AMB_RS01295 0.76 -0.4 286,957 - AMB_RS01295 0.76 -0.2 286,977 + AMB_RS01295 0.78 +0.1 286,977 + AMB_RS01295 0.78 -0.0 286,977 + AMB_RS01295 0.78 -1.3 286,977 + AMB_RS01295 0.78 -0.1 286,977 + AMB_RS01295 0.78 +0.9 286,977 + AMB_RS01295 0.78 -0.4 286,978 - AMB_RS01295 0.78 -0.4 286,978 - AMB_RS01295 0.78 +0.1 286,978 - AMB_RS01295 0.78 +0.6 286,978 - AMB_RS01295 0.78 +0.0 286,978 - AMB_RS01295 0.78 +0.7 286,978 - AMB_RS01295 0.78 -0.2 286,978 - AMB_RS01295 0.78 -0.3 286,978 - AMB_RS01295 0.78 +0.5 286,978 - AMB_RS01295 0.78 +0.0 286,978 - AMB_RS01295 0.78 +0.1 286,990 - AMB_RS01295 0.79 -0.4 287,143 - +0.2 287,215 + +0.1 287,215 + -0.8 287,216 - +2.5 287,261 + -0.2 287,262 - +0.1 287,351 + AMB_RS01300 0.16 +0.0 287,351 + AMB_RS01300 0.16 -0.3 287,540 + AMB_RS01300 0.35 +0.1 287,540 + AMB_RS01300 0.35 -0.7 287,540 + AMB_RS01300 0.35 -0.4 287,540 + AMB_RS01300 0.35 -0.7 287,540 + AMB_RS01300 0.35 -1.0 287,540 + AMB_RS01300 0.35 +0.0 287,540 + AMB_RS01300 0.35 -2.6 287,540 + AMB_RS01300 0.35 -0.5 287,540 + AMB_RS01300 0.35 +0.5 287,540 + AMB_RS01300 0.35 -1.1 287,540 + AMB_RS01300 0.35 -1.3 287,540 + AMB_RS01300 0.35 -1.1 287,541 - AMB_RS01300 0.36 +0.5 287,543 + AMB_RS01300 0.36 +0.2 287,543 + AMB_RS01300 0.36 -2.6 287,543 + AMB_RS01300 0.36 -0.3 287,543 + AMB_RS01300 0.36 +0.2 287,543 + AMB_RS01300 0.36 -0.5 287,543 + AMB_RS01300 0.36 -0.7 287,543 + AMB_RS01300 0.36 -1.2 287,543 + AMB_RS01300 0.36 -1.0 287,543 + AMB_RS01300 0.36 -0.2 287,543 + AMB_RS01300 0.36 -0.2 287,543 + AMB_RS01300 0.36 +0.0 287,544 - AMB_RS01300 0.36 +0.0 287,544 - AMB_RS01300 0.36 -0.0 287,544 - AMB_RS01300 0.36 -0.1 287,709 - AMB_RS01300 0.53 -0.1 287,709 - AMB_RS01300 0.53 +0.9 287,709 - AMB_RS01300 0.53 -0.1 287,891 + AMB_RS01300 0.71 -0.7 287,891 + AMB_RS01300 0.71 -0.5 287,891 + AMB_RS01300 0.71 -0.7 287,891 + AMB_RS01300 0.71 -0.7 287,891 + AMB_RS01300 0.71 -0.3 287,891 + AMB_RS01300 0.71 -0.9 287,891 + AMB_RS01300 0.71 -1.5 287,892 - AMB_RS01300 0.71 +0.7 288,134 + -0.7 288,134 + -2.4 288,134 + -2.5 288,134 + -2.8 288,135 - -0.4 288,176 + -0.9 288,176 + -0.9 288,176 + -2.0 288,176 + -1.2 288,177 - +0.2 288,188 + -0.5 288,188 + -0.3 288,188 + -0.5 288,188 + +0.0 288,188 + +0.9 288,189 - -0.3 288,189 - -1.7
Or see this region's nucleotide sequence