Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS22390 and ABIE41_RS22395 are separated by 154 nucleotides ABIE41_RS22395 and ABIE41_RS22400 are separated by 278 nucleotides ABIE41_RS22400 and ABIE41_RS22405 are separated by 93 nucleotides ABIE41_RS22405 and ABIE41_RS22410 overlap by 4 nucleotides
ABIE41_RS22390: ABIE41_RS22390 - pyruvate, phosphate dikinase, at 4,608,447 to 4,611,132
_RS22390
ABIE41_RS22395: ABIE41_RS22395 - YcgN family cysteine cluster protein, at 4,611,287 to 4,611,781
_RS22395
ABIE41_RS22400: ABIE41_RS22400 - PBP1A family penicillin-binding protein, at 4,612,060 to 4,614,285
_RS22400
ABIE41_RS22405: ABIE41_RS22405 - DUF1214 domain-containing protein, at 4,614,379 to 4,614,954
_RS22405
ABIE41_RS22410: ABIE41_RS22410 - hypothetical protein, at 4,614,951 to 4,615,589
_RS22410
Position (kb) 4612
4613
4614
4615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4611.110 kb on + strand at 4611.110 kb on + strand at 4611.111 kb on - strand at 4611.579 kb on + strand, within ABIE41_RS22395 at 4611.579 kb on + strand, within ABIE41_RS22395 at 4611.579 kb on + strand, within ABIE41_RS22395 at 4611.580 kb on - strand, within ABIE41_RS22395 at 4611.790 kb on - strand at 4611.790 kb on - strand at 4611.835 kb on + strand at 4611.836 kb on - strand at 4611.836 kb on - strand at 4611.952 kb on + strand at 4611.952 kb on + strand at 4611.952 kb on + strand at 4611.952 kb on + strand at 4611.953 kb on - strand at 4611.953 kb on - strand at 4611.953 kb on - strand at 4611.953 kb on - strand at 4611.953 kb on - strand at 4611.953 kb on - strand at 4611.953 kb on - strand at 4611.953 kb on - strand at 4611.956 kb on + strand at 4611.956 kb on + strand at 4611.956 kb on + strand at 4611.956 kb on + strand at 4611.956 kb on + strand at 4611.956 kb on + strand at 4611.956 kb on + strand at 4611.956 kb on + strand at 4611.957 kb on - strand at 4611.957 kb on - strand at 4611.957 kb on - strand at 4611.957 kb on - strand at 4611.957 kb on - strand at 4611.957 kb on - strand at 4611.957 kb on - strand at 4611.957 kb on - strand at 4611.957 kb on - strand at 4611.957 kb on - strand at 4611.957 kb on - strand at 4611.957 kb on - strand at 4611.977 kb on - strand at 4612.171 kb on + strand at 4612.171 kb on + strand at 4612.171 kb on + strand at 4612.172 kb on - strand at 4612.172 kb on - strand at 4612.172 kb on - strand at 4612.172 kb on - strand at 4612.172 kb on - strand at 4612.172 kb on - strand at 4612.172 kb on - strand at 4612.172 kb on - strand at 4612.172 kb on - strand at 4612.172 kb on - strand at 4612.172 kb on - strand at 4612.480 kb on + strand, within ABIE41_RS22400 at 4612.481 kb on - strand, within ABIE41_RS22400 at 4612.696 kb on + strand, within ABIE41_RS22400 at 4612.697 kb on - strand, within ABIE41_RS22400 at 4612.697 kb on - strand, within ABIE41_RS22400 at 4612.711 kb on + strand, within ABIE41_RS22400 at 4612.711 kb on + strand, within ABIE41_RS22400 at 4612.711 kb on + strand, within ABIE41_RS22400 at 4612.712 kb on - strand, within ABIE41_RS22400 at 4612.712 kb on - strand, within ABIE41_RS22400 at 4612.712 kb on - strand, within ABIE41_RS22400 at 4612.712 kb on - strand, within ABIE41_RS22400 at 4612.712 kb on - strand, within ABIE41_RS22400 at 4612.712 kb on - strand, within ABIE41_RS22400 at 4612.712 kb on - strand, within ABIE41_RS22400 at 4612.713 kb on + strand, within ABIE41_RS22400 at 4612.754 kb on - strand, within ABIE41_RS22400 at 4612.754 kb on - strand, within ABIE41_RS22400 at 4612.756 kb on + strand, within ABIE41_RS22400 at 4612.757 kb on - strand, within ABIE41_RS22400 at 4612.757 kb on - strand, within ABIE41_RS22400 at 4612.757 kb on - strand, within ABIE41_RS22400 at 4612.834 kb on + strand, within ABIE41_RS22400 at 4612.834 kb on + strand, within ABIE41_RS22400 at 4612.835 kb on - strand, within ABIE41_RS22400 at 4612.990 kb on + strand, within ABIE41_RS22400 at 4612.990 kb on + strand, within ABIE41_RS22400 at 4613.297 kb on - strand, within ABIE41_RS22400 at 4613.323 kb on + strand, within ABIE41_RS22400 at 4613.324 kb on - strand, within ABIE41_RS22400 at 4613.719 kb on + strand, within ABIE41_RS22400 at 4613.719 kb on + strand, within ABIE41_RS22400 at 4613.719 kb on + strand, within ABIE41_RS22400 at 4613.881 kb on + strand, within ABIE41_RS22400 at 4613.881 kb on + strand, within ABIE41_RS22400 at 4613.896 kb on + strand, within ABIE41_RS22400 at 4613.896 kb on + strand, within ABIE41_RS22400 at 4613.897 kb on - strand, within ABIE41_RS22400 at 4613.897 kb on - strand, within ABIE41_RS22400 at 4613.905 kb on + strand, within ABIE41_RS22400 at 4613.905 kb on + strand, within ABIE41_RS22400 at 4614.144 kb on + strand at 4614.145 kb on - strand at 4614.145 kb on - strand at 4614.284 kb on - strand at 4614.400 kb on + strand at 4614.401 kb on - strand at 4614.401 kb on - strand at 4614.401 kb on - strand at 4614.401 kb on - strand at 4614.535 kb on + strand, within ABIE41_RS22405 at 4614.535 kb on + strand, within ABIE41_RS22405 at 4614.535 kb on + strand, within ABIE41_RS22405 at 4614.535 kb on + strand, within ABIE41_RS22405 at 4614.535 kb on + strand, within ABIE41_RS22405 at 4614.535 kb on + strand, within ABIE41_RS22405 at 4614.535 kb on + strand, within ABIE41_RS22405 at 4614.535 kb on + strand, within ABIE41_RS22405 at 4614.536 kb on - strand, within ABIE41_RS22405 at 4614.537 kb on + strand, within ABIE41_RS22405 at 4614.537 kb on + strand, within ABIE41_RS22405 at 4614.537 kb on + strand, within ABIE41_RS22405 at 4614.537 kb on + strand, within ABIE41_RS22405 at 4614.537 kb on + strand, within ABIE41_RS22405 at 4614.537 kb on + strand, within ABIE41_RS22405 at 4614.537 kb on + strand, within ABIE41_RS22405 at 4614.538 kb on - strand, within ABIE41_RS22405 at 4614.538 kb on - strand, within ABIE41_RS22405 at 4614.538 kb on - strand, within ABIE41_RS22405 at 4614.547 kb on + strand, within ABIE41_RS22405 at 4614.874 kb on + strand, within ABIE41_RS22405 at 4614.874 kb on + strand, within ABIE41_RS22405 at 4614.874 kb on + strand, within ABIE41_RS22405 at 4614.875 kb on - strand, within ABIE41_RS22405 at 4614.880 kb on - strand, within ABIE41_RS22405 at 4615.094 kb on + strand, within ABIE41_RS22410 at 4615.095 kb on - strand, within ABIE41_RS22410 at 4615.149 kb on + strand, within ABIE41_RS22410 at 4615.149 kb on + strand, within ABIE41_RS22410 at 4615.150 kb on - strand, within ABIE41_RS22410 at 4615.150 kb on - strand, within ABIE41_RS22410 at 4615.150 kb on - strand, within ABIE41_RS22410 at 4615.150 kb on - strand, within ABIE41_RS22410 at 4615.260 kb on + strand, within ABIE41_RS22410 at 4615.260 kb on + strand, within ABIE41_RS22410 at 4615.261 kb on - strand, within ABIE41_RS22410 at 4615.261 kb on - strand, within ABIE41_RS22410 at 4615.261 kb on - strand, within ABIE41_RS22410 at 4615.261 kb on - strand, within ABIE41_RS22410
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 4,611,110 + -0.6 4,611,110 + -3.5 4,611,111 - -2.2 4,611,579 + ABIE41_RS22395 0.59 +1.3 4,611,579 + ABIE41_RS22395 0.59 -0.7 4,611,579 + ABIE41_RS22395 0.59 -1.4 4,611,580 - ABIE41_RS22395 0.59 +0.1 4,611,790 - +0.0 4,611,790 - +0.0 4,611,835 + -0.2 4,611,836 - -0.8 4,611,836 - -0.0 4,611,952 + -0.1 4,611,952 + -0.5 4,611,952 + +0.3 4,611,952 + -1.8 4,611,953 - +0.5 4,611,953 - +0.4 4,611,953 - +0.2 4,611,953 - +1.6 4,611,953 - +0.9 4,611,953 - -0.3 4,611,953 - +0.9 4,611,953 - -0.1 4,611,956 + -0.3 4,611,956 + -1.7 4,611,956 + +0.3 4,611,956 + -1.0 4,611,956 + -0.4 4,611,956 + -0.3 4,611,956 + -0.3 4,611,956 + +0.2 4,611,957 - +0.2 4,611,957 - -0.6 4,611,957 - +0.9 4,611,957 - -0.1 4,611,957 - +0.3 4,611,957 - -0.7 4,611,957 - +2.2 4,611,957 - +1.6 4,611,957 - +0.0 4,611,957 - +0.4 4,611,957 - -0.3 4,611,957 - +0.8 4,611,977 - -2.2 4,612,171 + +0.2 4,612,171 + -0.2 4,612,171 + -0.0 4,612,172 - +1.4 4,612,172 - +1.2 4,612,172 - +0.4 4,612,172 - -0.5 4,612,172 - +0.6 4,612,172 - +0.1 4,612,172 - +0.4 4,612,172 - +0.3 4,612,172 - -0.1 4,612,172 - -2.0 4,612,172 - +0.7 4,612,480 + ABIE41_RS22400 0.19 -0.4 4,612,481 - ABIE41_RS22400 0.19 +0.0 4,612,696 + ABIE41_RS22400 0.29 +0.3 4,612,697 - ABIE41_RS22400 0.29 -0.0 4,612,697 - ABIE41_RS22400 0.29 +2.3 4,612,711 + ABIE41_RS22400 0.29 +0.3 4,612,711 + ABIE41_RS22400 0.29 +0.2 4,612,711 + ABIE41_RS22400 0.29 -0.4 4,612,712 - ABIE41_RS22400 0.29 +1.9 4,612,712 - ABIE41_RS22400 0.29 +0.6 4,612,712 - ABIE41_RS22400 0.29 +2.2 4,612,712 - ABIE41_RS22400 0.29 -0.1 4,612,712 - ABIE41_RS22400 0.29 +0.4 4,612,712 - ABIE41_RS22400 0.29 +0.2 4,612,712 - ABIE41_RS22400 0.29 +0.6 4,612,713 + ABIE41_RS22400 0.29 +0.5 4,612,754 - ABIE41_RS22400 0.31 -0.4 4,612,754 - ABIE41_RS22400 0.31 -1.3 4,612,756 + ABIE41_RS22400 0.31 -1.4 4,612,757 - ABIE41_RS22400 0.31 +0.5 4,612,757 - ABIE41_RS22400 0.31 +1.6 4,612,757 - ABIE41_RS22400 0.31 -0.0 4,612,834 + ABIE41_RS22400 0.35 -1.1 4,612,834 + ABIE41_RS22400 0.35 +0.5 4,612,835 - ABIE41_RS22400 0.35 +0.7 4,612,990 + ABIE41_RS22400 0.42 +0.9 4,612,990 + ABIE41_RS22400 0.42 +1.3 4,613,297 - ABIE41_RS22400 0.56 -0.2 4,613,323 + ABIE41_RS22400 0.57 +0.0 4,613,324 - ABIE41_RS22400 0.57 +0.1 4,613,719 + ABIE41_RS22400 0.75 +0.5 4,613,719 + ABIE41_RS22400 0.75 +0.2 4,613,719 + ABIE41_RS22400 0.75 -0.0 4,613,881 + ABIE41_RS22400 0.82 +0.1 4,613,881 + ABIE41_RS22400 0.82 +1.1 4,613,896 + ABIE41_RS22400 0.82 -0.6 4,613,896 + ABIE41_RS22400 0.82 -0.2 4,613,897 - ABIE41_RS22400 0.83 +0.8 4,613,897 - ABIE41_RS22400 0.83 +1.4 4,613,905 + ABIE41_RS22400 0.83 +1.4 4,613,905 + ABIE41_RS22400 0.83 +0.1 4,614,144 + -0.3 4,614,145 - +1.6 4,614,145 - +1.8 4,614,284 - +0.3 4,614,400 + -0.2 4,614,401 - +0.6 4,614,401 - -0.7 4,614,401 - +0.1 4,614,401 - +0.9 4,614,535 + ABIE41_RS22405 0.27 +0.6 4,614,535 + ABIE41_RS22405 0.27 -0.4 4,614,535 + ABIE41_RS22405 0.27 -0.6 4,614,535 + ABIE41_RS22405 0.27 -0.7 4,614,535 + ABIE41_RS22405 0.27 -0.0 4,614,535 + ABIE41_RS22405 0.27 +0.4 4,614,535 + ABIE41_RS22405 0.27 +0.5 4,614,535 + ABIE41_RS22405 0.27 -0.4 4,614,536 - ABIE41_RS22405 0.27 +0.6 4,614,537 + ABIE41_RS22405 0.27 +1.2 4,614,537 + ABIE41_RS22405 0.27 +0.1 4,614,537 + ABIE41_RS22405 0.27 +0.8 4,614,537 + ABIE41_RS22405 0.27 -0.1 4,614,537 + ABIE41_RS22405 0.27 -0.8 4,614,537 + ABIE41_RS22405 0.27 -0.3 4,614,537 + ABIE41_RS22405 0.27 +0.2 4,614,538 - ABIE41_RS22405 0.28 +1.4 4,614,538 - ABIE41_RS22405 0.28 +0.1 4,614,538 - ABIE41_RS22405 0.28 -0.6 4,614,547 + ABIE41_RS22405 0.29 -1.6 4,614,874 + ABIE41_RS22405 0.86 +0.0 4,614,874 + ABIE41_RS22405 0.86 +0.6 4,614,874 + ABIE41_RS22405 0.86 -0.1 4,614,875 - ABIE41_RS22405 0.86 +1.2 4,614,880 - ABIE41_RS22405 0.87 -0.1 4,615,094 + ABIE41_RS22410 0.22 +0.4 4,615,095 - ABIE41_RS22410 0.23 +0.4 4,615,149 + ABIE41_RS22410 0.31 +0.1 4,615,149 + ABIE41_RS22410 0.31 +1.3 4,615,150 - ABIE41_RS22410 0.31 -0.2 4,615,150 - ABIE41_RS22410 0.31 +0.5 4,615,150 - ABIE41_RS22410 0.31 +0.0 4,615,150 - ABIE41_RS22410 0.31 +0.5 4,615,260 + ABIE41_RS22410 0.48 +0.8 4,615,260 + ABIE41_RS22410 0.48 +1.2 4,615,261 - ABIE41_RS22410 0.49 -1.0 4,615,261 - ABIE41_RS22410 0.49 +0.3 4,615,261 - ABIE41_RS22410 0.49 +0.4 4,615,261 - ABIE41_RS22410 0.49 +1.3
Or see this region's nucleotide sequence