Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21790 and ABIE41_RS21795 overlap by 4 nucleotides ABIE41_RS21795 and ABIE41_RS21800 overlap by 8 nucleotides ABIE41_RS21800 and ABIE41_RS21805 are separated by 1 nucleotides
ABIE41_RS21790: ABIE41_RS21790 - branched-chain amino acid ABC transporter permease, at 4,481,833 to 4,482,759
_RS21790
ABIE41_RS21795: ABIE41_RS21795 - branched-chain amino acid ABC transporter permease, at 4,482,756 to 4,483,757
_RS21795
ABIE41_RS21800: ABIE41_RS21800 - ABC transporter ATP-binding protein, at 4,483,750 to 4,484,499
_RS21800
ABIE41_RS21805: ABIE41_RS21805 - ABC transporter ATP-binding protein, at 4,484,501 to 4,485,199
_RS21805
Position (kb) 4482
4483
4484 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4481.965 kb on + strand, within ABIE41_RS21790 at 4481.965 kb on + strand, within ABIE41_RS21790 at 4481.965 kb on + strand, within ABIE41_RS21790 at 4481.965 kb on + strand, within ABIE41_RS21790 at 4481.965 kb on + strand, within ABIE41_RS21790 at 4481.965 kb on + strand, within ABIE41_RS21790 at 4481.965 kb on + strand, within ABIE41_RS21790 at 4481.966 kb on - strand, within ABIE41_RS21790 at 4481.966 kb on - strand, within ABIE41_RS21790 at 4481.966 kb on - strand, within ABIE41_RS21790 at 4482.097 kb on + strand, within ABIE41_RS21790 at 4482.097 kb on + strand, within ABIE41_RS21790 at 4482.097 kb on + strand, within ABIE41_RS21790 at 4482.097 kb on + strand, within ABIE41_RS21790 at 4482.250 kb on + strand, within ABIE41_RS21790 at 4482.691 kb on + strand at 4482.691 kb on + strand at 4482.691 kb on + strand at 4482.691 kb on + strand at 4482.746 kb on - strand at 4483.021 kb on - strand, within ABIE41_RS21795 at 4483.119 kb on + strand, within ABIE41_RS21795 at 4483.120 kb on - strand, within ABIE41_RS21795 at 4483.120 kb on - strand, within ABIE41_RS21795 at 4483.185 kb on + strand, within ABIE41_RS21795 at 4483.212 kb on + strand, within ABIE41_RS21795 at 4483.212 kb on + strand, within ABIE41_RS21795 at 4483.212 kb on + strand, within ABIE41_RS21795 at 4483.213 kb on - strand, within ABIE41_RS21795 at 4483.240 kb on - strand, within ABIE41_RS21795 at 4483.240 kb on - strand, within ABIE41_RS21795 at 4483.240 kb on - strand, within ABIE41_RS21795 at 4483.240 kb on - strand, within ABIE41_RS21795 at 4483.296 kb on + strand, within ABIE41_RS21795 at 4483.296 kb on + strand, within ABIE41_RS21795 at 4483.296 kb on + strand, within ABIE41_RS21795 at 4483.297 kb on - strand, within ABIE41_RS21795 at 4483.297 kb on - strand, within ABIE41_RS21795 at 4483.326 kb on + strand, within ABIE41_RS21795 at 4483.326 kb on + strand, within ABIE41_RS21795 at 4483.326 kb on + strand, within ABIE41_RS21795 at 4483.327 kb on - strand, within ABIE41_RS21795 at 4483.327 kb on - strand, within ABIE41_RS21795 at 4483.446 kb on + strand, within ABIE41_RS21795 at 4483.446 kb on + strand, within ABIE41_RS21795 at 4483.446 kb on + strand, within ABIE41_RS21795 at 4483.447 kb on - strand, within ABIE41_RS21795 at 4484.413 kb on + strand, within ABIE41_RS21800 at 4484.414 kb on - strand, within ABIE41_RS21800 at 4484.414 kb on - strand, within ABIE41_RS21800 at 4484.414 kb on - strand, within ABIE41_RS21800 at 4484.479 kb on + strand at 4484.480 kb on - strand at 4484.480 kb on - strand at 4484.480 kb on - strand at 4484.480 kb on - strand at 4484.498 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 4,481,965 + ABIE41_RS21790 0.14 -0.1 4,481,965 + ABIE41_RS21790 0.14 +0.5 4,481,965 + ABIE41_RS21790 0.14 -0.2 4,481,965 + ABIE41_RS21790 0.14 -0.3 4,481,965 + ABIE41_RS21790 0.14 +0.6 4,481,965 + ABIE41_RS21790 0.14 -1.9 4,481,965 + ABIE41_RS21790 0.14 +0.2 4,481,966 - ABIE41_RS21790 0.14 +0.6 4,481,966 - ABIE41_RS21790 0.14 +0.4 4,481,966 - ABIE41_RS21790 0.14 +0.5 4,482,097 + ABIE41_RS21790 0.28 -0.0 4,482,097 + ABIE41_RS21790 0.28 +0.3 4,482,097 + ABIE41_RS21790 0.28 +1.6 4,482,097 + ABIE41_RS21790 0.28 +0.6 4,482,250 + ABIE41_RS21790 0.45 -0.8 4,482,691 + +0.6 4,482,691 + +0.0 4,482,691 + +0.2 4,482,691 + +1.8 4,482,746 - +1.1 4,483,021 - ABIE41_RS21795 0.26 -0.6 4,483,119 + ABIE41_RS21795 0.36 +1.4 4,483,120 - ABIE41_RS21795 0.36 -0.3 4,483,120 - ABIE41_RS21795 0.36 +3.6 4,483,185 + ABIE41_RS21795 0.43 +0.1 4,483,212 + ABIE41_RS21795 0.46 -1.0 4,483,212 + ABIE41_RS21795 0.46 +0.4 4,483,212 + ABIE41_RS21795 0.46 -1.9 4,483,213 - ABIE41_RS21795 0.46 +1.3 4,483,240 - ABIE41_RS21795 0.48 +1.4 4,483,240 - ABIE41_RS21795 0.48 -1.0 4,483,240 - ABIE41_RS21795 0.48 -0.4 4,483,240 - ABIE41_RS21795 0.48 +0.0 4,483,296 + ABIE41_RS21795 0.54 -1.6 4,483,296 + ABIE41_RS21795 0.54 +0.5 4,483,296 + ABIE41_RS21795 0.54 -1.4 4,483,297 - ABIE41_RS21795 0.54 -0.1 4,483,297 - ABIE41_RS21795 0.54 -0.3 4,483,326 + ABIE41_RS21795 0.57 -0.4 4,483,326 + ABIE41_RS21795 0.57 -0.2 4,483,326 + ABIE41_RS21795 0.57 +1.6 4,483,327 - ABIE41_RS21795 0.57 -1.7 4,483,327 - ABIE41_RS21795 0.57 -1.5 4,483,446 + ABIE41_RS21795 0.69 +0.4 4,483,446 + ABIE41_RS21795 0.69 +1.4 4,483,446 + ABIE41_RS21795 0.69 +0.0 4,483,447 - ABIE41_RS21795 0.69 +0.8 4,484,413 + ABIE41_RS21800 0.88 -0.1 4,484,414 - ABIE41_RS21800 0.89 +0.6 4,484,414 - ABIE41_RS21800 0.89 -0.1 4,484,414 - ABIE41_RS21800 0.89 +1.2 4,484,479 + +0.2 4,484,480 - -0.6 4,484,480 - -1.7 4,484,480 - -0.3 4,484,480 - +0.3 4,484,498 - -0.1
Or see this region's nucleotide sequence