Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS05650 and ABIE41_RS05655 overlap by 4 nucleotides ABIE41_RS05655 and ABIE41_RS05660 overlap by 1 nucleotides ABIE41_RS05660 and ABIE41_RS05665 are separated by 76 nucleotides ABIE41_RS05665 and ABIE41_RS05670 are separated by 160 nucleotides
ABIE41_RS05650: ABIE41_RS05650 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 1,161,732 to 1,162,802
_RS05650
ABIE41_RS05655: ABIE41_RS05655 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 1,162,799 to 1,163,812
_RS05655
ABIE41_RS05660: ABIE41_RS05660 - hypothetical protein, at 1,163,812 to 1,164,147
_RS05660
ABIE41_RS05665: ABIE41_RS05665 - EVE domain-containing protein, at 1,164,224 to 1,164,631
_RS05665
ABIE41_RS05670: ABIE41_RS05670 - DUF2235 domain-containing protein, at 1,164,792 to 1,165,919
_RS05670
Position (kb) 1162
1163
1164 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1162.851 kb on - strand at 1162.851 kb on - strand at 1163.106 kb on + strand, within ABIE41_RS05655 at 1163.107 kb on - strand, within ABIE41_RS05655 at 1163.330 kb on + strand, within ABIE41_RS05655 at 1163.330 kb on + strand, within ABIE41_RS05655 at 1163.330 kb on + strand, within ABIE41_RS05655 at 1163.330 kb on + strand, within ABIE41_RS05655 at 1163.330 kb on + strand, within ABIE41_RS05655 at 1163.331 kb on - strand, within ABIE41_RS05655 at 1163.331 kb on - strand, within ABIE41_RS05655 at 1163.331 kb on - strand, within ABIE41_RS05655 at 1163.331 kb on - strand, within ABIE41_RS05655 at 1163.421 kb on - strand, within ABIE41_RS05655 at 1163.421 kb on - strand, within ABIE41_RS05655 at 1163.661 kb on + strand, within ABIE41_RS05655 at 1163.661 kb on + strand, within ABIE41_RS05655 at 1163.661 kb on + strand, within ABIE41_RS05655 at 1163.661 kb on + strand, within ABIE41_RS05655 at 1163.661 kb on + strand, within ABIE41_RS05655 at 1163.662 kb on - strand, within ABIE41_RS05655 at 1163.662 kb on - strand, within ABIE41_RS05655 at 1163.727 kb on + strand at 1164.043 kb on + strand, within ABIE41_RS05660 at 1164.043 kb on + strand, within ABIE41_RS05660 at 1164.043 kb on + strand, within ABIE41_RS05660 at 1164.043 kb on + strand, within ABIE41_RS05660 at 1164.044 kb on - strand, within ABIE41_RS05660 at 1164.044 kb on - strand, within ABIE41_RS05660 at 1164.044 kb on - strand, within ABIE41_RS05660 at 1164.044 kb on - strand, within ABIE41_RS05660 at 1164.044 kb on - strand, within ABIE41_RS05660 at 1164.044 kb on - strand, within ABIE41_RS05660 at 1164.044 kb on - strand, within ABIE41_RS05660 at 1164.160 kb on - strand at 1164.377 kb on + strand, within ABIE41_RS05665 at 1164.377 kb on + strand, within ABIE41_RS05665 at 1164.377 kb on + strand, within ABIE41_RS05665 at 1164.377 kb on + strand, within ABIE41_RS05665 at 1164.378 kb on - strand, within ABIE41_RS05665 at 1164.378 kb on - strand, within ABIE41_RS05665 at 1164.378 kb on - strand, within ABIE41_RS05665 at 1164.378 kb on - strand, within ABIE41_RS05665 at 1164.434 kb on + strand, within ABIE41_RS05665 at 1164.434 kb on + strand, within ABIE41_RS05665 at 1164.434 kb on + strand, within ABIE41_RS05665 at 1164.434 kb on + strand, within ABIE41_RS05665 at 1164.434 kb on + strand, within ABIE41_RS05665 at 1164.434 kb on + strand, within ABIE41_RS05665 at 1164.435 kb on - strand, within ABIE41_RS05665 at 1164.435 kb on - strand, within ABIE41_RS05665 at 1164.435 kb on - strand, within ABIE41_RS05665 at 1164.435 kb on - strand, within ABIE41_RS05665 at 1164.435 kb on - strand, within ABIE41_RS05665 at 1164.435 kb on - strand, within ABIE41_RS05665 at 1164.435 kb on - strand, within ABIE41_RS05665 at 1164.436 kb on + strand, within ABIE41_RS05665 at 1164.436 kb on + strand, within ABIE41_RS05665 at 1164.436 kb on + strand, within ABIE41_RS05665 at 1164.437 kb on - strand, within ABIE41_RS05665 at 1164.437 kb on - strand, within ABIE41_RS05665 at 1164.629 kb on + strand at 1164.629 kb on + strand at 1164.629 kb on + strand at 1164.629 kb on + strand at 1164.630 kb on - strand at 1164.630 kb on - strand at 1164.671 kb on - strand at 1164.671 kb on - strand at 1164.716 kb on - strand at 1164.716 kb on - strand at 1164.793 kb on + strand at 1164.811 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 1,162,851 - -0.2 1,162,851 - -3.2 1,163,106 + ABIE41_RS05655 0.30 -1.5 1,163,107 - ABIE41_RS05655 0.30 -1.0 1,163,330 + ABIE41_RS05655 0.52 -1.7 1,163,330 + ABIE41_RS05655 0.52 -1.7 1,163,330 + ABIE41_RS05655 0.52 -0.5 1,163,330 + ABIE41_RS05655 0.52 -0.9 1,163,330 + ABIE41_RS05655 0.52 +0.0 1,163,331 - ABIE41_RS05655 0.52 -2.2 1,163,331 - ABIE41_RS05655 0.52 -1.9 1,163,331 - ABIE41_RS05655 0.52 +1.2 1,163,331 - ABIE41_RS05655 0.52 -0.6 1,163,421 - ABIE41_RS05655 0.61 -1.1 1,163,421 - ABIE41_RS05655 0.61 -2.0 1,163,661 + ABIE41_RS05655 0.85 +0.0 1,163,661 + ABIE41_RS05655 0.85 -1.0 1,163,661 + ABIE41_RS05655 0.85 -0.4 1,163,661 + ABIE41_RS05655 0.85 -0.4 1,163,661 + ABIE41_RS05655 0.85 -1.6 1,163,662 - ABIE41_RS05655 0.85 -1.4 1,163,662 - ABIE41_RS05655 0.85 +0.6 1,163,727 + -0.2 1,164,043 + ABIE41_RS05660 0.69 +0.3 1,164,043 + ABIE41_RS05660 0.69 +0.7 1,164,043 + ABIE41_RS05660 0.69 -1.2 1,164,043 + ABIE41_RS05660 0.69 -0.0 1,164,044 - ABIE41_RS05660 0.69 +0.2 1,164,044 - ABIE41_RS05660 0.69 -0.9 1,164,044 - ABIE41_RS05660 0.69 +0.1 1,164,044 - ABIE41_RS05660 0.69 -0.1 1,164,044 - ABIE41_RS05660 0.69 +0.1 1,164,044 - ABIE41_RS05660 0.69 +0.6 1,164,044 - ABIE41_RS05660 0.69 -0.2 1,164,160 - +0.2 1,164,377 + ABIE41_RS05665 0.38 -0.9 1,164,377 + ABIE41_RS05665 0.38 +0.3 1,164,377 + ABIE41_RS05665 0.38 +0.1 1,164,377 + ABIE41_RS05665 0.38 -0.5 1,164,378 - ABIE41_RS05665 0.38 -1.5 1,164,378 - ABIE41_RS05665 0.38 -0.5 1,164,378 - ABIE41_RS05665 0.38 +0.7 1,164,378 - ABIE41_RS05665 0.38 +0.4 1,164,434 + ABIE41_RS05665 0.51 +0.0 1,164,434 + ABIE41_RS05665 0.51 +1.1 1,164,434 + ABIE41_RS05665 0.51 +0.0 1,164,434 + ABIE41_RS05665 0.51 -0.3 1,164,434 + ABIE41_RS05665 0.51 -0.3 1,164,434 + ABIE41_RS05665 0.51 -0.1 1,164,435 - ABIE41_RS05665 0.52 +0.1 1,164,435 - ABIE41_RS05665 0.52 +0.3 1,164,435 - ABIE41_RS05665 0.52 +0.7 1,164,435 - ABIE41_RS05665 0.52 +1.6 1,164,435 - ABIE41_RS05665 0.52 +0.4 1,164,435 - ABIE41_RS05665 0.52 -0.1 1,164,435 - ABIE41_RS05665 0.52 -0.2 1,164,436 + ABIE41_RS05665 0.52 +0.1 1,164,436 + ABIE41_RS05665 0.52 -0.2 1,164,436 + ABIE41_RS05665 0.52 -0.0 1,164,437 - ABIE41_RS05665 0.52 +0.0 1,164,437 - ABIE41_RS05665 0.52 +0.4 1,164,629 + +0.7 1,164,629 + +0.3 1,164,629 + -0.2 1,164,629 + -0.1 1,164,630 - +0.0 1,164,630 - -0.9 1,164,671 - +0.5 1,164,671 - +0.5 1,164,716 - -0.0 1,164,716 - -0.1 1,164,793 + +0.6 1,164,811 + +0.5
Or see this region's nucleotide sequence