Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01565

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01560 and ABIE41_RS01565 are separated by 5 nucleotidesABIE41_RS01565 and ABIE41_RS01570 overlap by 4 nucleotidesABIE41_RS01570 and ABIE41_RS01575 overlap by 4 nucleotides ABIE41_RS01560: ABIE41_RS01560 - FAD-dependent oxidoreductase, at 310,824 to 311,957 _RS01560 ABIE41_RS01565: ABIE41_RS01565 - ABC transporter permease, at 311,963 to 312,763 _RS01565 ABIE41_RS01570: ABIE41_RS01570 - ABC transporter permease, at 312,760 to 313,626 _RS01570 ABIE41_RS01575: ABIE41_RS01575 - ABC transporter ATP-binding protein, at 313,623 to 314,666 _RS01575 Position (kb) 311 312 313Strain fitness (log2 ratio) -2 -1 0 1 2at 310.993 kb on + strand, within ABIE41_RS01560at 310.993 kb on + strand, within ABIE41_RS01560at 310.994 kb on - strand, within ABIE41_RS01560at 310.994 kb on - strand, within ABIE41_RS01560at 310.994 kb on - strand, within ABIE41_RS01560at 311.051 kb on + strand, within ABIE41_RS01560at 311.494 kb on + strand, within ABIE41_RS01560at 311.494 kb on + strand, within ABIE41_RS01560at 311.495 kb on - strand, within ABIE41_RS01560at 311.495 kb on - strand, within ABIE41_RS01560at 311.758 kb on + strand, within ABIE41_RS01560at 312.083 kb on - strand, within ABIE41_RS01565at 312.096 kb on + strand, within ABIE41_RS01565at 312.096 kb on + strand, within ABIE41_RS01565at 312.097 kb on - strand, within ABIE41_RS01565at 312.097 kb on - strand, within ABIE41_RS01565at 312.304 kb on - strand, within ABIE41_RS01565at 312.304 kb on - strand, within ABIE41_RS01565at 312.495 kb on + strand, within ABIE41_RS01565at 312.600 kb on + strand, within ABIE41_RS01565at 312.600 kb on + strand, within ABIE41_RS01565at 312.657 kb on + strand, within ABIE41_RS01565at 312.657 kb on + strand, within ABIE41_RS01565at 312.657 kb on + strand, within ABIE41_RS01565at 312.658 kb on - strand, within ABIE41_RS01565at 312.658 kb on - strand, within ABIE41_RS01565at 312.658 kb on - strand, within ABIE41_RS01565at 312.658 kb on - strand, within ABIE41_RS01565at 312.780 kb on - strandat 312.893 kb on + strand, within ABIE41_RS01570at 312.893 kb on + strand, within ABIE41_RS01570at 312.894 kb on - strand, within ABIE41_RS01570at 313.350 kb on + strand, within ABIE41_RS01570at 313.351 kb on - strand, within ABIE41_RS01570at 313.351 kb on - strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.352 kb on + strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.353 kb on - strand, within ABIE41_RS01570at 313.436 kb on + strand, within ABIE41_RS01570at 313.436 kb on + strand, within ABIE41_RS01570at 313.436 kb on + strand, within ABIE41_RS01570at 313.437 kb on - strand, within ABIE41_RS01570at 313.496 kb on + strand, within ABIE41_RS01570at 313.496 kb on + strand, within ABIE41_RS01570at 313.496 kb on + strand, within ABIE41_RS01570at 313.496 kb on + strand, within ABIE41_RS01570at 313.497 kb on - strand, within ABIE41_RS01570at 313.497 kb on - strand, within ABIE41_RS01570at 313.497 kb on - strand, within ABIE41_RS01570at 313.511 kb on + strand, within ABIE41_RS01570at 313.511 kb on + strand, within ABIE41_RS01570at 313.512 kb on - strand, within ABIE41_RS01570

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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310,993 + ABIE41_RS01560 0.15 +0.6
310,993 + ABIE41_RS01560 0.15 +1.2
310,994 - ABIE41_RS01560 0.15 +0.2
310,994 - ABIE41_RS01560 0.15 +0.5
310,994 - ABIE41_RS01560 0.15 +0.4
311,051 + ABIE41_RS01560 0.20 +0.0
311,494 + ABIE41_RS01560 0.59 +0.4
311,494 + ABIE41_RS01560 0.59 +1.5
311,495 - ABIE41_RS01560 0.59 +0.6
311,495 - ABIE41_RS01560 0.59 +1.3
311,758 + ABIE41_RS01560 0.82 +2.2
312,083 - ABIE41_RS01565 0.15 -0.9
312,096 + ABIE41_RS01565 0.17 -0.4
312,096 + ABIE41_RS01565 0.17 -1.1
312,097 - ABIE41_RS01565 0.17 +0.1
312,097 - ABIE41_RS01565 0.17 +0.1
312,304 - ABIE41_RS01565 0.43 -0.8
312,304 - ABIE41_RS01565 0.43 +0.4
312,495 + ABIE41_RS01565 0.66 +0.0
312,600 + ABIE41_RS01565 0.80 +0.4
312,600 + ABIE41_RS01565 0.80 +0.9
312,657 + ABIE41_RS01565 0.87 +0.4
312,657 + ABIE41_RS01565 0.87 +1.7
312,657 + ABIE41_RS01565 0.87 +1.3
312,658 - ABIE41_RS01565 0.87 -0.2
312,658 - ABIE41_RS01565 0.87 -0.1
312,658 - ABIE41_RS01565 0.87 -0.5
312,658 - ABIE41_RS01565 0.87 -0.1
312,780 - -0.6
312,893 + ABIE41_RS01570 0.15 +0.2
312,893 + ABIE41_RS01570 0.15 -1.2
312,894 - ABIE41_RS01570 0.15 -0.7
313,350 + ABIE41_RS01570 0.68 +0.4
313,351 - ABIE41_RS01570 0.68 -0.6
313,351 - ABIE41_RS01570 0.68 +1.1
313,352 + ABIE41_RS01570 0.68 -0.3
313,352 + ABIE41_RS01570 0.68 +0.2
313,352 + ABIE41_RS01570 0.68 -1.6
313,352 + ABIE41_RS01570 0.68 -1.0
313,352 + ABIE41_RS01570 0.68 -1.5
313,352 + ABIE41_RS01570 0.68 +1.6
313,352 + ABIE41_RS01570 0.68 -0.2
313,352 + ABIE41_RS01570 0.68 -0.8
313,352 + ABIE41_RS01570 0.68 -1.7
313,352 + ABIE41_RS01570 0.68 +0.2
313,352 + ABIE41_RS01570 0.68 +1.0
313,353 - ABIE41_RS01570 0.68 +0.0
313,353 - ABIE41_RS01570 0.68 +0.4
313,353 - ABIE41_RS01570 0.68 +0.1
313,353 - ABIE41_RS01570 0.68 -0.4
313,353 - ABIE41_RS01570 0.68 -1.0
313,353 - ABIE41_RS01570 0.68 +0.0
313,353 - ABIE41_RS01570 0.68 +1.6
313,353 - ABIE41_RS01570 0.68 -0.0
313,353 - ABIE41_RS01570 0.68 -1.2
313,353 - ABIE41_RS01570 0.68 -0.8
313,436 + ABIE41_RS01570 0.78 +1.0
313,436 + ABIE41_RS01570 0.78 -0.2
313,436 + ABIE41_RS01570 0.78 +0.3
313,437 - ABIE41_RS01570 0.78 +0.6
313,496 + ABIE41_RS01570 0.85 +1.6
313,496 + ABIE41_RS01570 0.85 -0.3
313,496 + ABIE41_RS01570 0.85 -2.2
313,496 + ABIE41_RS01570 0.85 -0.3
313,497 - ABIE41_RS01570 0.85 -0.6
313,497 - ABIE41_RS01570 0.85 -0.6
313,497 - ABIE41_RS01570 0.85 +0.0
313,511 + ABIE41_RS01570 0.87 +0.4
313,511 + ABIE41_RS01570 0.87 -0.4
313,512 - ABIE41_RS01570 0.87 -0.6

Or see this region's nucleotide sequence