Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27585 and ABID97_RS27590 are separated by 449 nucleotides ABID97_RS27590 and ABID97_RS27595 are separated by 32 nucleotides
ABID97_RS27585: ABID97_RS27585 - branched-chain amino acid ABC transporter substrate-binding protein, at 434,836 to 435,939
_RS27585
ABID97_RS27590: ABID97_RS27590 - L-glutamate gamma-semialdehyde dehydrogenase, at 436,389 to 437,939
_RS27590
ABID97_RS27595: ABID97_RS27595 - pyridoxal phosphate-dependent aminotransferase, at 437,972 to 439,174
_RS27595
Position (kb) 436
437
438 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 435.480 kb on - strand, within ABID97_RS27585 at 436.028 kb on + strand at 436.429 kb on - strand at 436.429 kb on - strand at 436.501 kb on - strand at 436.753 kb on - strand, within ABID97_RS27590 at 436.899 kb on + strand, within ABID97_RS27590 at 436.899 kb on + strand, within ABID97_RS27590 at 436.900 kb on - strand, within ABID97_RS27590 at 436.900 kb on - strand, within ABID97_RS27590 at 436.900 kb on - strand, within ABID97_RS27590 at 437.091 kb on + strand, within ABID97_RS27590 at 437.392 kb on - strand, within ABID97_RS27590 at 437.892 kb on + strand at 438.236 kb on + strand, within ABID97_RS27595
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 435,480 - ABID97_RS27585 0.58 +3.5 436,028 + -1.9 436,429 - +2.5 436,429 - +0.1 436,501 - -0.7 436,753 - ABID97_RS27590 0.23 +0.5 436,899 + ABID97_RS27590 0.33 -0.1 436,899 + ABID97_RS27590 0.33 -0.0 436,900 - ABID97_RS27590 0.33 -0.4 436,900 - ABID97_RS27590 0.33 +0.5 436,900 - ABID97_RS27590 0.33 +0.0 437,091 + ABID97_RS27590 0.45 +0.5 437,392 - ABID97_RS27590 0.65 +0.5 437,892 + +0.8 438,236 + ABID97_RS27595 0.22 +0.2
Or see this region's nucleotide sequence