Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19965

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS19960 and ABID97_RS19965 are separated by 370 nucleotidesABID97_RS19965 and ABID97_RS19970 are separated by 26 nucleotidesABID97_RS19970 and ABID97_RS19975 are separated by 13 nucleotides ABID97_RS19960: ABID97_RS19960 - DeoR/GlpR family DNA-binding transcription regulator, at 4,120,923 to 4,121,690 _RS19960 ABID97_RS19965: ABID97_RS19965 - glycerol kinase GlpK, at 4,122,061 to 4,123,554 _RS19965 ABID97_RS19970: ABID97_RS19970 - hypothetical protein, at 4,123,581 to 4,124,225 _RS19970 ABID97_RS19975: ABID97_RS19975 - hypothetical protein, at 4,124,239 to 4,125,114 _RS19975 Position (kb) 4122 4123 4124Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4122.067 kb on + strandat 4122.075 kb on - strandat 4122.844 kb on + strand, within ABID97_RS19965at 4122.844 kb on + strand, within ABID97_RS19965at 4122.844 kb on + strand, within ABID97_RS19965at 4122.845 kb on - strand, within ABID97_RS19965at 4122.845 kb on - strand, within ABID97_RS19965at 4123.356 kb on - strand, within ABID97_RS19965at 4123.424 kb on - strandat 4123.619 kb on - strandat 4123.619 kb on - strandat 4123.619 kb on - strandat 4123.694 kb on - strand, within ABID97_RS19970at 4123.711 kb on + strand, within ABID97_RS19970at 4123.762 kb on + strand, within ABID97_RS19970at 4123.849 kb on + strand, within ABID97_RS19970at 4123.850 kb on - strand, within ABID97_RS19970at 4123.850 kb on - strand, within ABID97_RS19970at 4123.931 kb on - strand, within ABID97_RS19970at 4123.998 kb on - strand, within ABID97_RS19970at 4124.051 kb on + strand, within ABID97_RS19970at 4124.051 kb on + strand, within ABID97_RS19970at 4124.051 kb on + strand, within ABID97_RS19970at 4124.052 kb on - strand, within ABID97_RS19970at 4124.052 kb on - strand, within ABID97_RS19970at 4124.056 kb on - strand, within ABID97_RS19970at 4124.074 kb on + strandat 4124.090 kb on - strand, within ABID97_RS19970at 4124.113 kb on + strand, within ABID97_RS19970at 4124.215 kb on + strandat 4124.339 kb on - strand, within ABID97_RS19975

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
4,122,067 + -4.0
4,122,075 - -4.9
4,122,844 + ABID97_RS19965 0.52 -3.1
4,122,844 + ABID97_RS19965 0.52 -1.9
4,122,844 + ABID97_RS19965 0.52 -5.0
4,122,845 - ABID97_RS19965 0.52 -4.0
4,122,845 - ABID97_RS19965 0.52 -6.2
4,123,356 - ABID97_RS19965 0.87 -5.8
4,123,424 - -5.6
4,123,619 - -2.0
4,123,619 - -1.0
4,123,619 - -0.7
4,123,694 - ABID97_RS19970 0.18 -0.4
4,123,711 + ABID97_RS19970 0.20 -0.4
4,123,762 + ABID97_RS19970 0.28 -0.0
4,123,849 + ABID97_RS19970 0.42 -0.3
4,123,850 - ABID97_RS19970 0.42 -0.3
4,123,850 - ABID97_RS19970 0.42 -0.6
4,123,931 - ABID97_RS19970 0.54 +0.3
4,123,998 - ABID97_RS19970 0.65 -0.0
4,124,051 + ABID97_RS19970 0.73 +0.1
4,124,051 + ABID97_RS19970 0.73 +0.2
4,124,051 + ABID97_RS19970 0.73 -0.4
4,124,052 - ABID97_RS19970 0.73 +1.3
4,124,052 - ABID97_RS19970 0.73 +0.2
4,124,056 - ABID97_RS19970 0.74 -0.1
4,124,074 + +1.7
4,124,090 - ABID97_RS19970 0.79 +0.4
4,124,113 + ABID97_RS19970 0.82 +0.0
4,124,215 + +0.2
4,124,339 - ABID97_RS19975 0.11 -0.1

Or see this region's nucleotide sequence