Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16155

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16145 and ABID97_RS16150 are separated by 72 nucleotidesABID97_RS16150 and ABID97_RS16155 are separated by 189 nucleotidesABID97_RS16155 and ABID97_RS16160 are separated by 45 nucleotides ABID97_RS16145: ABID97_RS16145 - universal stress protein, at 3,343,145 to 3,343,567 _RS16145 ABID97_RS16150: ABID97_RS16150 - hemerythrin domain-containing protein, at 3,343,640 to 3,344,224 _RS16150 ABID97_RS16155: ABID97_RS16155 - universal stress protein, at 3,344,414 to 3,344,923 _RS16155 ABID97_RS16160: ABID97_RS16160 - fatty acid desaturase, at 3,344,969 to 3,346,153 _RS16160 Position (kb) 3344 3345Strain fitness (log2 ratio) -2 -1 0 1at 3343.513 kb on - strand, within ABID97_RS16145at 3343.533 kb on + strandat 3343.848 kb on + strand, within ABID97_RS16150at 3343.849 kb on - strand, within ABID97_RS16150at 3343.861 kb on - strand, within ABID97_RS16150at 3343.861 kb on - strand, within ABID97_RS16150at 3344.082 kb on + strand, within ABID97_RS16150at 3344.083 kb on - strand, within ABID97_RS16150at 3344.417 kb on + strandat 3344.417 kb on + strandat 3344.418 kb on - strandat 3344.418 kb on - strandat 3344.564 kb on + strand, within ABID97_RS16155at 3344.565 kb on - strand, within ABID97_RS16155at 3344.565 kb on - strand, within ABID97_RS16155at 3344.565 kb on - strand, within ABID97_RS16155at 3344.976 kb on + strandat 3344.976 kb on + strandat 3344.976 kb on + strandat 3345.016 kb on + strandat 3345.309 kb on + strand, within ABID97_RS16160at 3345.310 kb on - strand, within ABID97_RS16160at 3345.475 kb on - strand, within ABID97_RS16160at 3345.475 kb on - strand, within ABID97_RS16160at 3345.609 kb on + strand, within ABID97_RS16160at 3345.756 kb on + strand, within ABID97_RS16160at 3345.837 kb on + strand, within ABID97_RS16160

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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3,343,513 - ABID97_RS16145 0.87 -0.4
3,343,533 + +0.6
3,343,848 + ABID97_RS16150 0.36 +0.2
3,343,849 - ABID97_RS16150 0.36 -0.0
3,343,861 - ABID97_RS16150 0.38 -1.2
3,343,861 - ABID97_RS16150 0.38 +0.2
3,344,082 + ABID97_RS16150 0.76 -0.7
3,344,083 - ABID97_RS16150 0.76 -0.5
3,344,417 + -0.3
3,344,417 + -1.2
3,344,418 - -0.7
3,344,418 - -0.2
3,344,564 + ABID97_RS16155 0.29 +0.3
3,344,565 - ABID97_RS16155 0.30 +0.4
3,344,565 - ABID97_RS16155 0.30 -2.7
3,344,565 - ABID97_RS16155 0.30 +0.8
3,344,976 + +0.4
3,344,976 + -1.6
3,344,976 + +1.6
3,345,016 + -0.4
3,345,309 + ABID97_RS16160 0.29 -0.2
3,345,310 - ABID97_RS16160 0.29 -0.7
3,345,475 - ABID97_RS16160 0.43 +0.1
3,345,475 - ABID97_RS16160 0.43 -1.7
3,345,609 + ABID97_RS16160 0.54 +0.2
3,345,756 + ABID97_RS16160 0.66 -0.3
3,345,837 + ABID97_RS16160 0.73 -0.2

Or see this region's nucleotide sequence