Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14350

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14340 and ABID97_RS14345 are separated by 32 nucleotidesABID97_RS14345 and ABID97_RS14350 overlap by 4 nucleotidesABID97_RS14350 and ABID97_RS14355 are separated by 82 nucleotides ABID97_RS14340: ABID97_RS14340 - aldo/keto reductase, at 2,979,627 to 2,980,592 _RS14340 ABID97_RS14345: ABID97_RS14345 - chromate transporter, at 2,980,625 to 2,981,233 _RS14345 ABID97_RS14350: ABID97_RS14350 - chromate transporter, at 2,981,230 to 2,981,820 _RS14350 ABID97_RS14355: ABID97_RS14355 - YihY/virulence factor BrkB family protein, at 2,981,903 to 2,982,826 _RS14355 Position (kb) 2981 2982Strain fitness (log2 ratio) -1 0 1at 2980.282 kb on + strand, within ABID97_RS14340at 2980.283 kb on - strand, within ABID97_RS14340at 2980.884 kb on + strand, within ABID97_RS14345at 2980.884 kb on + strand, within ABID97_RS14345at 2980.884 kb on + strand, within ABID97_RS14345at 2980.884 kb on + strand, within ABID97_RS14345at 2980.885 kb on - strand, within ABID97_RS14345at 2980.885 kb on - strand, within ABID97_RS14345at 2980.885 kb on - strand, within ABID97_RS14345at 2980.885 kb on - strand, within ABID97_RS14345at 2981.113 kb on - strand, within ABID97_RS14345at 2981.478 kb on - strand, within ABID97_RS14350at 2981.486 kb on + strand, within ABID97_RS14350at 2981.486 kb on + strand, within ABID97_RS14350at 2981.486 kb on + strand, within ABID97_RS14350at 2981.486 kb on + strand, within ABID97_RS14350at 2981.486 kb on + strand, within ABID97_RS14350at 2981.487 kb on - strand, within ABID97_RS14350at 2981.570 kb on + strand, within ABID97_RS14350at 2981.970 kb on - strandat 2982.000 kb on - strand, within ABID97_RS14355at 2982.000 kb on - strand, within ABID97_RS14355at 2982.002 kb on + strand, within ABID97_RS14355at 2982.002 kb on + strand, within ABID97_RS14355at 2982.002 kb on + strand, within ABID97_RS14355at 2982.002 kb on + strand, within ABID97_RS14355at 2982.002 kb on + strand, within ABID97_RS14355at 2982.002 kb on + strand, within ABID97_RS14355at 2982.002 kb on + strand, within ABID97_RS14355at 2982.003 kb on - strand, within ABID97_RS14355at 2982.003 kb on - strand, within ABID97_RS14355at 2982.454 kb on - strand, within ABID97_RS14355at 2982.454 kb on - strand, within ABID97_RS14355at 2982.506 kb on + strand, within ABID97_RS14355at 2982.507 kb on - strand, within ABID97_RS14355at 2982.507 kb on - strand, within ABID97_RS14355at 2982.507 kb on - strand, within ABID97_RS14355at 2982.507 kb on - strand, within ABID97_RS14355at 2982.608 kb on + strand, within ABID97_RS14355at 2982.608 kb on + strand, within ABID97_RS14355at 2982.608 kb on + strand, within ABID97_RS14355at 2982.680 kb on + strand, within ABID97_RS14355at 2982.680 kb on + strand, within ABID97_RS14355at 2982.680 kb on + strand, within ABID97_RS14355at 2982.681 kb on - strand, within ABID97_RS14355at 2982.683 kb on + strand, within ABID97_RS14355at 2982.683 kb on + strand, within ABID97_RS14355at 2982.684 kb on - strand, within ABID97_RS14355at 2982.728 kb on + strand, within ABID97_RS14355at 2982.729 kb on - strand, within ABID97_RS14355at 2982.729 kb on - strand, within ABID97_RS14355at 2982.741 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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2,980,282 + ABID97_RS14340 0.68 -0.2
2,980,283 - ABID97_RS14340 0.68 -0.8
2,980,884 + ABID97_RS14345 0.43 +0.1
2,980,884 + ABID97_RS14345 0.43 +0.7
2,980,884 + ABID97_RS14345 0.43 -0.2
2,980,884 + ABID97_RS14345 0.43 -0.0
2,980,885 - ABID97_RS14345 0.43 -0.3
2,980,885 - ABID97_RS14345 0.43 -0.4
2,980,885 - ABID97_RS14345 0.43 -0.0
2,980,885 - ABID97_RS14345 0.43 -0.5
2,981,113 - ABID97_RS14345 0.80 +0.1
2,981,478 - ABID97_RS14350 0.42 -0.5
2,981,486 + ABID97_RS14350 0.43 +0.3
2,981,486 + ABID97_RS14350 0.43 +0.2
2,981,486 + ABID97_RS14350 0.43 -0.2
2,981,486 + ABID97_RS14350 0.43 -0.9
2,981,486 + ABID97_RS14350 0.43 -0.4
2,981,487 - ABID97_RS14350 0.43 -0.8
2,981,570 + ABID97_RS14350 0.58 +0.0
2,981,970 - -0.0
2,982,000 - ABID97_RS14355 0.10 +0.1
2,982,000 - ABID97_RS14355 0.10 -0.1
2,982,002 + ABID97_RS14355 0.11 +0.3
2,982,002 + ABID97_RS14355 0.11 -0.3
2,982,002 + ABID97_RS14355 0.11 -0.2
2,982,002 + ABID97_RS14355 0.11 -0.2
2,982,002 + ABID97_RS14355 0.11 +0.7
2,982,002 + ABID97_RS14355 0.11 +0.3
2,982,002 + ABID97_RS14355 0.11 -0.7
2,982,003 - ABID97_RS14355 0.11 +0.0
2,982,003 - ABID97_RS14355 0.11 -0.0
2,982,454 - ABID97_RS14355 0.60 +0.8
2,982,454 - ABID97_RS14355 0.60 +0.2
2,982,506 + ABID97_RS14355 0.65 -0.1
2,982,507 - ABID97_RS14355 0.65 -0.1
2,982,507 - ABID97_RS14355 0.65 -0.1
2,982,507 - ABID97_RS14355 0.65 +0.1
2,982,507 - ABID97_RS14355 0.65 -1.3
2,982,608 + ABID97_RS14355 0.76 -0.4
2,982,608 + ABID97_RS14355 0.76 +1.2
2,982,608 + ABID97_RS14355 0.76 +0.2
2,982,680 + ABID97_RS14355 0.84 +0.1
2,982,680 + ABID97_RS14355 0.84 -0.1
2,982,680 + ABID97_RS14355 0.84 -0.9
2,982,681 - ABID97_RS14355 0.84 -0.2
2,982,683 + ABID97_RS14355 0.84 -0.9
2,982,683 + ABID97_RS14355 0.84 -0.1
2,982,684 - ABID97_RS14355 0.85 +0.7
2,982,728 + ABID97_RS14355 0.89 +0.2
2,982,729 - ABID97_RS14355 0.89 -0.1
2,982,729 - ABID97_RS14355 0.89 -0.3
2,982,741 - +0.2

Or see this region's nucleotide sequence