Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12575

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12565 and ABID97_RS12570 are separated by 48 nucleotidesABID97_RS12570 and ABID97_RS12575 are separated by 15 nucleotidesABID97_RS12575 and ABID97_RS12580 overlap by 4 nucleotidesABID97_RS12580 and ABID97_RS12585 are separated by 1 nucleotides ABID97_RS12565: ABID97_RS12565 - beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein, at 2,608,987 to 2,610,036 _RS12565 ABID97_RS12570: ABID97_RS12570 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 2,610,085 to 2,611,002 _RS12570 ABID97_RS12575: ABID97_RS12575 - ATP-grasp domain-containing protein, at 2,611,018 to 2,612,166 _RS12575 ABID97_RS12580: ABID97_RS12580 - methenyltetrahydromethanopterin cyclohydrolase, at 2,612,163 to 2,613,161 _RS12580 ABID97_RS12585: ABID97_RS12585 - RimK family alpha-L-glutamate ligase, at 2,613,163 to 2,614,110 _RS12585 Position (kb) 2611 2612 2613Strain fitness (log2 ratio) -1 0 1at 2610.188 kb on - strand, within ABID97_RS12570at 2610.386 kb on - strand, within ABID97_RS12570at 2610.541 kb on + strand, within ABID97_RS12570at 2610.541 kb on + strand, within ABID97_RS12570at 2611.648 kb on + strand, within ABID97_RS12575at 2611.648 kb on + strand, within ABID97_RS12575at 2612.466 kb on + strand, within ABID97_RS12580at 2612.467 kb on - strand, within ABID97_RS12580at 2613.024 kb on + strand, within ABID97_RS12580at 2613.033 kb on + strand, within ABID97_RS12580at 2613.034 kb on - strand, within ABID97_RS12580

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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2,610,188 - ABID97_RS12570 0.11 -0.0
2,610,386 - ABID97_RS12570 0.33 +0.6
2,610,541 + ABID97_RS12570 0.50 +0.4
2,610,541 + ABID97_RS12570 0.50 -0.3
2,611,648 + ABID97_RS12575 0.55 -1.5
2,611,648 + ABID97_RS12575 0.55 +0.2
2,612,466 + ABID97_RS12580 0.30 +0.6
2,612,467 - ABID97_RS12580 0.30 -0.4
2,613,024 + ABID97_RS12580 0.86 +0.8
2,613,033 + ABID97_RS12580 0.87 -0.1
2,613,034 - ABID97_RS12580 0.87 +0.3

Or see this region's nucleotide sequence