Strain Fitness in Agrobacterium fabrum C58 around Atu8055

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6056 and Atu8055 are separated by 41 nucleotidesAtu8055 and Atu6057 are separated by 125 nucleotides Atu6056: Atu6056 - Phenazine biosynthesis protein, at 67,445 to 68,317 Atu6056 Atu8055: Atu8055 - hypothetical protein, at 68,359 to 68,622 Atu8055 Atu6057: Atu6057 - ABC transporter, membrane spanning protein (nitrate/sulfonates), at 68,748 to 69,689 Atu6057 Position (kb) 68 69Strain fitness (log2 ratio) -1 0 1 2at 67.383 kb on + strandat 67.385 kb on + strandat 67.385 kb on + strandat 67.388 kb on + strandat 67.388 kb on + strandat 67.393 kb on - strandat 67.396 kb on - strandat 67.471 kb on - strandat 67.533 kb on + strand, within Atu6056at 67.541 kb on - strand, within Atu6056at 67.579 kb on + strand, within Atu6056at 67.598 kb on - strand, within Atu6056at 67.654 kb on + strand, within Atu6056at 67.662 kb on + strand, within Atu6056at 67.683 kb on + strand, within Atu6056at 67.690 kb on + strand, within Atu6056at 67.690 kb on + strand, within Atu6056at 67.698 kb on - strand, within Atu6056at 67.748 kb on - strand, within Atu6056at 67.760 kb on - strand, within Atu6056at 67.834 kb on - strand, within Atu6056at 67.844 kb on - strand, within Atu6056at 67.862 kb on + strand, within Atu6056at 67.869 kb on + strand, within Atu6056at 67.875 kb on + strand, within Atu6056at 67.881 kb on + strand, within Atu6056at 67.882 kb on - strand, within Atu6056at 67.883 kb on - strand, within Atu6056at 67.888 kb on - strand, within Atu6056at 67.889 kb on - strand, within Atu6056at 67.993 kb on - strand, within Atu6056at 68.020 kb on + strand, within Atu6056at 68.040 kb on + strand, within Atu6056at 68.041 kb on - strand, within Atu6056at 68.079 kb on - strand, within Atu6056at 68.089 kb on - strand, within Atu6056at 68.089 kb on - strand, within Atu6056at 68.095 kb on + strand, within Atu6056at 68.171 kb on + strand, within Atu6056at 68.212 kb on + strand, within Atu6056at 68.224 kb on - strand, within Atu6056at 68.238 kb on - strandat 68.264 kb on - strandat 68.291 kb on - strandat 68.296 kb on - strandat 68.301 kb on - strandat 68.357 kb on - strandat 68.383 kb on + strandat 68.410 kb on - strand, within Atu8055at 68.427 kb on - strand, within Atu8055at 68.540 kb on + strand, within Atu8055at 68.563 kb on - strand, within Atu8055at 68.746 kb on + strandat 68.758 kb on + strandat 68.777 kb on - strandat 68.880 kb on + strand, within Atu6057at 69.052 kb on + strand, within Atu6057at 69.101 kb on + strand, within Atu6057at 69.104 kb on - strand, within Atu6057at 69.117 kb on + strand, within Atu6057at 69.117 kb on + strand, within Atu6057at 69.125 kb on - strand, within Atu6057at 69.125 kb on - strand, within Atu6057at 69.131 kb on - strand, within Atu6057at 69.141 kb on + strand, within Atu6057at 69.148 kb on + strand, within Atu6057at 69.171 kb on + strand, within Atu6057at 69.184 kb on - strand, within Atu6057at 69.184 kb on - strand, within Atu6057at 69.271 kb on + strand, within Atu6057at 69.337 kb on + strand, within Atu6057at 69.356 kb on - strand, within Atu6057at 69.474 kb on - strand, within Atu6057at 69.476 kb on + strand, within Atu6057at 69.482 kb on + strand, within Atu6057at 69.483 kb on + strand, within Atu6057at 69.493 kb on + strand, within Atu6057at 69.493 kb on + strand, within Atu6057at 69.503 kb on - strand, within Atu6057at 69.534 kb on + strand, within Atu6057at 69.600 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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67,383 + +0.4
67,385 + +0.6
67,385 + +1.6
67,388 + +0.4
67,388 + +0.2
67,393 - +0.0
67,396 - -0.5
67,471 - +0.4
67,533 + Atu6056 0.10 +0.6
67,541 - Atu6056 0.11 +0.4
67,579 + Atu6056 0.15 +0.3
67,598 - Atu6056 0.18 +0.3
67,654 + Atu6056 0.24 -0.7
67,662 + Atu6056 0.25 +1.0
67,683 + Atu6056 0.27 +0.1
67,690 + Atu6056 0.28 +0.1
67,690 + Atu6056 0.28 +1.0
67,698 - Atu6056 0.29 +0.2
67,748 - Atu6056 0.35 +1.0
67,760 - Atu6056 0.36 +1.2
67,834 - Atu6056 0.45 +0.7
67,844 - Atu6056 0.46 +0.5
67,862 + Atu6056 0.48 +2.0
67,869 + Atu6056 0.49 -1.0
67,875 + Atu6056 0.49 +2.0
67,881 + Atu6056 0.50 +0.6
67,882 - Atu6056 0.50 +0.6
67,883 - Atu6056 0.50 +0.0
67,888 - Atu6056 0.51 +0.2
67,889 - Atu6056 0.51 +0.4
67,993 - Atu6056 0.63 -0.5
68,020 + Atu6056 0.66 +0.3
68,040 + Atu6056 0.68 +0.7
68,041 - Atu6056 0.68 -0.4
68,079 - Atu6056 0.73 +0.4
68,089 - Atu6056 0.74 -0.4
68,089 - Atu6056 0.74 +0.6
68,095 + Atu6056 0.74 +0.5
68,171 + Atu6056 0.83 +0.2
68,212 + Atu6056 0.88 +0.0
68,224 - Atu6056 0.89 +0.5
68,238 - +1.3
68,264 - +0.1
68,291 - +0.3
68,296 - +0.7
68,301 - +0.1
68,357 - +0.2
68,383 + +0.1
68,410 - Atu8055 0.19 +0.5
68,427 - Atu8055 0.26 +0.6
68,540 + Atu8055 0.69 +2.6
68,563 - Atu8055 0.77 +1.8
68,746 + +0.3
68,758 + +0.4
68,777 - -0.2
68,880 + Atu6057 0.14 +0.1
69,052 + Atu6057 0.32 -0.3
69,101 + Atu6057 0.37 +0.6
69,104 - Atu6057 0.38 +2.0
69,117 + Atu6057 0.39 +0.7
69,117 + Atu6057 0.39 +0.9
69,125 - Atu6057 0.40 +1.3
69,125 - Atu6057 0.40 +0.6
69,131 - Atu6057 0.41 -0.9
69,141 + Atu6057 0.42 +0.3
69,148 + Atu6057 0.42 -0.4
69,171 + Atu6057 0.45 +1.6
69,184 - Atu6057 0.46 -0.6
69,184 - Atu6057 0.46 +0.4
69,271 + Atu6057 0.56 +2.0
69,337 + Atu6057 0.63 +0.2
69,356 - Atu6057 0.65 +1.2
69,474 - Atu6057 0.77 -0.3
69,476 + Atu6057 0.77 -1.5
69,482 + Atu6057 0.78 +0.1
69,483 + Atu6057 0.78 +0.0
69,493 + Atu6057 0.79 -1.0
69,493 + Atu6057 0.79 +0.4
69,503 - Atu6057 0.80 -1.4
69,534 + Atu6057 0.83 -0.0
69,600 + +0.4

Or see this region's nucleotide sequence