Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3730 and Atu3731 are separated by 99 nucleotides Atu3731 and Atu3732 overlap by 1 nucleotides Atu3732 and Atu3733 are separated by 2 nucleotides Atu3733 and Atu8191 are separated by 236 nucleotides Atu8191 and Atu8192 are separated by 11 nucleotides
Atu3730: Atu3730 - hypothetical protein, at 810,848 to 811,672
Atu3730
Atu3731: Atu3731 - 5-formyltetrahydrofolate cyclo-ligase, at 811,772 to 812,359
Atu3731
Atu3732: Atu3732 - hemolysin, at 812,359 to 813,636
Atu3732
Atu3733: Atu3733 - hypothetical protein, at 813,639 to 813,851
Atu3733
Atu8191: Atu8191 - hypothetical protein, at 814,088 to 814,465
Atu8191
Atu8192: Atu8192 - hypothetical protein, at 814,477 to 814,749
Atu8192
Position (kb) 812
813
814 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 811.457 kb on - strand, within Atu3730 at 811.871 kb on + strand, within Atu3731 at 811.886 kb on + strand, within Atu3731 at 811.886 kb on + strand, within Atu3731 at 811.891 kb on + strand, within Atu3731 at 811.899 kb on - strand, within Atu3731 at 812.058 kb on + strand, within Atu3731 at 812.151 kb on + strand, within Atu3731 at 812.224 kb on + strand, within Atu3731 at 812.232 kb on - strand, within Atu3731 at 812.255 kb on - strand, within Atu3731 at 812.268 kb on + strand, within Atu3731 at 812.360 kb on - strand at 812.364 kb on - strand at 812.364 kb on - strand at 812.454 kb on + strand at 812.454 kb on + strand at 812.506 kb on - strand, within Atu3732 at 812.706 kb on - strand, within Atu3732 at 812.724 kb on - strand, within Atu3732 at 812.740 kb on + strand, within Atu3732 at 812.769 kb on - strand, within Atu3732 at 812.769 kb on - strand, within Atu3732 at 812.837 kb on - strand, within Atu3732 at 812.947 kb on + strand, within Atu3732 at 812.955 kb on - strand, within Atu3732 at 812.956 kb on + strand, within Atu3732 at 813.058 kb on - strand, within Atu3732 at 813.060 kb on + strand, within Atu3732 at 813.060 kb on + strand, within Atu3732 at 813.064 kb on + strand, within Atu3732 at 813.079 kb on + strand, within Atu3732 at 813.079 kb on + strand, within Atu3732 at 813.079 kb on + strand, within Atu3732 at 813.087 kb on - strand, within Atu3732 at 813.087 kb on - strand, within Atu3732 at 813.087 kb on - strand, within Atu3732 at 813.087 kb on - strand, within Atu3732 at 813.116 kb on + strand, within Atu3732 at 813.116 kb on + strand, within Atu3732 at 813.124 kb on - strand, within Atu3732 at 813.124 kb on - strand, within Atu3732 at 813.124 kb on - strand, within Atu3732 at 813.124 kb on - strand, within Atu3732 at 813.124 kb on - strand, within Atu3732 at 813.222 kb on + strand, within Atu3732 at 813.367 kb on + strand, within Atu3732 at 813.436 kb on - strand, within Atu3732 at 813.512 kb on + strand at 813.542 kb on - strand at 813.590 kb on + strand at 813.598 kb on - strand at 813.607 kb on - strand at 813.654 kb on + strand at 813.662 kb on - strand, within Atu3733 at 813.780 kb on - strand, within Atu3733 at 813.840 kb on - strand at 813.920 kb on + strand at 813.972 kb on - strand at 814.026 kb on + strand at 814.037 kb on + strand at 814.134 kb on - strand, within Atu8191 at 814.425 kb on + strand, within Atu8191 at 814.483 kb on + strand at 814.586 kb on - strand, within Atu8192
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 811,457 - Atu3730 0.74 -0.9 811,871 + Atu3731 0.17 -4.9 811,886 + Atu3731 0.19 -3.7 811,886 + Atu3731 0.19 -4.9 811,891 + Atu3731 0.20 -4.3 811,899 - Atu3731 0.22 -4.7 812,058 + Atu3731 0.49 -5.1 812,151 + Atu3731 0.64 -1.0 812,224 + Atu3731 0.77 -4.6 812,232 - Atu3731 0.78 -5.0 812,255 - Atu3731 0.82 -4.1 812,268 + Atu3731 0.84 -2.5 812,360 - +0.4 812,364 - -1.2 812,364 - +0.6 812,454 + -3.0 812,454 + -1.2 812,506 - Atu3732 0.12 +0.1 812,706 - Atu3732 0.27 -0.0 812,724 - Atu3732 0.29 -1.0 812,740 + Atu3732 0.30 -2.4 812,769 - Atu3732 0.32 -1.9 812,769 - Atu3732 0.32 -2.4 812,837 - Atu3732 0.37 -3.4 812,947 + Atu3732 0.46 -3.3 812,955 - Atu3732 0.47 -1.8 812,956 + Atu3732 0.47 -0.1 813,058 - Atu3732 0.55 +2.0 813,060 + Atu3732 0.55 -1.1 813,060 + Atu3732 0.55 -1.4 813,064 + Atu3732 0.55 -1.1 813,079 + Atu3732 0.56 -1.0 813,079 + Atu3732 0.56 -1.3 813,079 + Atu3732 0.56 -0.2 813,087 - Atu3732 0.57 -0.6 813,087 - Atu3732 0.57 -2.4 813,087 - Atu3732 0.57 -1.8 813,087 - Atu3732 0.57 +0.0 813,116 + Atu3732 0.59 -0.4 813,116 + Atu3732 0.59 +0.6 813,124 - Atu3732 0.60 -1.6 813,124 - Atu3732 0.60 -0.1 813,124 - Atu3732 0.60 -1.5 813,124 - Atu3732 0.60 +0.0 813,124 - Atu3732 0.60 +0.3 813,222 + Atu3732 0.68 +0.1 813,367 + Atu3732 0.79 -4.7 813,436 - Atu3732 0.84 -0.7 813,512 + -0.0 813,542 - -1.2 813,590 + -0.5 813,598 - -0.0 813,607 - -3.6 813,654 + -0.0 813,662 - Atu3733 0.11 -0.4 813,780 - Atu3733 0.66 +0.3 813,840 - -0.2 813,920 + -2.5 813,972 - -0.6 814,026 + -1.8 814,037 + +0.2 814,134 - Atu8191 0.12 -0.0 814,425 + Atu8191 0.89 +0.3 814,483 + -2.5 814,586 - Atu8192 0.40 -3.4
Or see this region's nucleotide sequence