Experiment: 30_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23280 and AMB_RS07265 overlap by 27 nucleotides AMB_RS07265 and AMB_RS24245 are separated by 26 nucleotides AMB_RS24245 and AMB_RS24250 are separated by 261 nucleotides
AMB_RS23280: AMB_RS23280 - glycosyltransferase family 1 protein, at 1,566,395 to 1,567,732
_RS23280
AMB_RS07265: AMB_RS07265 - glycosyltransferase, at 1,567,706 to 1,568,473
_RS07265
AMB_RS24245: AMB_RS24245 - hypothetical protein, at 1,568,500 to 1,568,772
_RS24245
AMB_RS24250: AMB_RS24250 - hypothetical protein, at 1,569,034 to 1,569,900
_RS24250
AMB_RS07275: AMB_RS07275 - xylanase/chitin deacetylase, at 1,569,627 to 1,570,373
_RS07275
Position (kb) 1568
1569 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1567.697 kb on + strand at 1567.697 kb on + strand at 1567.698 kb on - strand at 1567.698 kb on - strand at 1567.698 kb on - strand at 1567.698 kb on - strand at 1567.698 kb on - strand at 1567.710 kb on - strand at 1568.126 kb on + strand, within AMB_RS07265 at 1568.214 kb on + strand, within AMB_RS07265 at 1568.214 kb on + strand, within AMB_RS07265 at 1568.362 kb on + strand, within AMB_RS07265 at 1568.362 kb on + strand, within AMB_RS07265 at 1568.362 kb on + strand, within AMB_RS07265 at 1568.362 kb on + strand, within AMB_RS07265 at 1568.362 kb on + strand, within AMB_RS07265 at 1568.362 kb on + strand, within AMB_RS07265 at 1568.362 kb on + strand, within AMB_RS07265 at 1568.362 kb on + strand, within AMB_RS07265 at 1568.362 kb on + strand, within AMB_RS07265 at 1568.363 kb on - strand, within AMB_RS07265 at 1568.363 kb on - strand, within AMB_RS07265 at 1568.363 kb on - strand, within AMB_RS07265 at 1568.363 kb on - strand, within AMB_RS07265 at 1568.363 kb on - strand, within AMB_RS07265 at 1568.363 kb on - strand, within AMB_RS07265 at 1568.363 kb on - strand, within AMB_RS07265 at 1568.363 kb on - strand, within AMB_RS07265 at 1568.364 kb on + strand, within AMB_RS07265 at 1568.365 kb on - strand, within AMB_RS07265 at 1568.365 kb on - strand, within AMB_RS07265 at 1568.365 kb on - strand, within AMB_RS07265 at 1568.499 kb on - strand at 1568.549 kb on + strand, within AMB_RS24245 at 1568.549 kb on + strand, within AMB_RS24245 at 1568.549 kb on + strand, within AMB_RS24245 at 1568.549 kb on + strand, within AMB_RS24245 at 1568.550 kb on - strand, within AMB_RS24245 at 1568.550 kb on - strand, within AMB_RS24245 at 1568.550 kb on - strand, within AMB_RS24245 at 1568.550 kb on - strand, within AMB_RS24245 at 1569.040 kb on - strand at 1569.057 kb on + strand at 1569.209 kb on + strand, within AMB_RS24250 at 1569.399 kb on + strand, within AMB_RS24250 at 1569.626 kb on - strand, within AMB_RS24250 at 1569.626 kb on - strand, within AMB_RS24250
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_3 remove 1,567,697 + +0.2 1,567,697 + -0.6 1,567,698 - -1.3 1,567,698 - -1.1 1,567,698 - -2.5 1,567,698 - +0.7 1,567,698 - -2.7 1,567,710 - +0.0 1,568,126 + AMB_RS07265 0.55 +2.7 1,568,214 + AMB_RS07265 0.66 -1.1 1,568,214 + AMB_RS07265 0.66 +0.7 1,568,362 + AMB_RS07265 0.85 -0.5 1,568,362 + AMB_RS07265 0.85 -0.5 1,568,362 + AMB_RS07265 0.85 +0.5 1,568,362 + AMB_RS07265 0.85 -1.0 1,568,362 + AMB_RS07265 0.85 +0.8 1,568,362 + AMB_RS07265 0.85 -0.9 1,568,362 + AMB_RS07265 0.85 -0.0 1,568,362 + AMB_RS07265 0.85 +2.5 1,568,362 + AMB_RS07265 0.85 +1.3 1,568,363 - AMB_RS07265 0.86 +0.3 1,568,363 - AMB_RS07265 0.86 -0.3 1,568,363 - AMB_RS07265 0.86 +0.0 1,568,363 - AMB_RS07265 0.86 -0.0 1,568,363 - AMB_RS07265 0.86 -0.1 1,568,363 - AMB_RS07265 0.86 -0.2 1,568,363 - AMB_RS07265 0.86 -1.3 1,568,363 - AMB_RS07265 0.86 -0.4 1,568,364 + AMB_RS07265 0.86 +1.6 1,568,365 - AMB_RS07265 0.86 +0.3 1,568,365 - AMB_RS07265 0.86 +0.5 1,568,365 - AMB_RS07265 0.86 +0.0 1,568,499 - +0.2 1,568,549 + AMB_RS24245 0.18 +1.3 1,568,549 + AMB_RS24245 0.18 -3.6 1,568,549 + AMB_RS24245 0.18 -0.5 1,568,549 + AMB_RS24245 0.18 -0.3 1,568,550 - AMB_RS24245 0.18 -1.5 1,568,550 - AMB_RS24245 0.18 +0.6 1,568,550 - AMB_RS24245 0.18 -0.6 1,568,550 - AMB_RS24245 0.18 +0.3 1,569,040 - +0.3 1,569,057 + -0.1 1,569,209 + AMB_RS24250 0.20 -0.1 1,569,399 + AMB_RS24250 0.42 -0.0 1,569,626 - AMB_RS24250 0.68 -1.7 1,569,626 - AMB_RS24250 0.68 -0.6
Or see this region's nucleotide sequence