Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23090

Experiment: 30_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00420 and AMB_RS23090 overlap by 4 nucleotidesAMB_RS23090 and AMB_RS00430 overlap by 4 nucleotides AMB_RS00420: AMB_RS00420 - hypothetical protein, at 91,177 to 92,289 _RS00420 AMB_RS23090: AMB_RS23090 - NAD(P)-dependent oxidoreductase, at 92,286 to 93,182 _RS23090 AMB_RS00430: AMB_RS00430 - CBS domain-containing protein, at 93,179 to 94,228 _RS00430 Position (kb) 92 93 94Strain fitness (log2 ratio) -2 -1 0 1at 92.679 kb on + strand, within AMB_RS23090at 92.679 kb on + strand, within AMB_RS23090at 92.679 kb on + strand, within AMB_RS23090at 92.679 kb on + strand, within AMB_RS23090at 92.679 kb on + strand, within AMB_RS23090at 92.780 kb on + strand, within AMB_RS23090at 92.780 kb on + strand, within AMB_RS23090

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_3
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92,679 + AMB_RS23090 0.44 -2.4
92,679 + AMB_RS23090 0.44 -0.7
92,679 + AMB_RS23090 0.44 -0.7
92,679 + AMB_RS23090 0.44 -1.0
92,679 + AMB_RS23090 0.44 -0.2
92,780 + AMB_RS23090 0.55 -0.2
92,780 + AMB_RS23090 0.55 -1.2

Or see this region's nucleotide sequence