Experiment: 30_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21975 and AMB_RS21980 are separated by 128 nucleotides AMB_RS21980 and AMB_RS21985 are separated by 63 nucleotides
AMB_RS21975: AMB_RS21975 - GGDEF domain-containing protein, at 4,749,123 to 4,750,190
_RS21975
AMB_RS21980: AMB_RS21980 - prenyltransferase, at 4,750,319 to 4,751,266
_RS21980
AMB_RS21985: AMB_RS21985 - redox-regulated ATPase YchF, at 4,751,330 to 4,752,433
_RS21985
Position (kb) 4750
4751
4752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4749.395 kb on + strand, within AMB_RS21975 at 4749.396 kb on - strand, within AMB_RS21975 at 4749.396 kb on - strand, within AMB_RS21975 at 4749.396 kb on - strand, within AMB_RS21975 at 4749.400 kb on + strand, within AMB_RS21975 at 4749.871 kb on + strand, within AMB_RS21975 at 4749.871 kb on + strand, within AMB_RS21975 at 4749.871 kb on + strand, within AMB_RS21975 at 4749.871 kb on + strand, within AMB_RS21975 at 4749.872 kb on - strand, within AMB_RS21975 at 4749.872 kb on - strand, within AMB_RS21975 at 4750.281 kb on + strand at 4750.281 kb on + strand at 4750.282 kb on - strand at 4750.778 kb on + strand, within AMB_RS21980 at 4750.779 kb on - strand, within AMB_RS21980 at 4750.779 kb on - strand, within AMB_RS21980 at 4750.905 kb on + strand, within AMB_RS21980 at 4750.906 kb on - strand, within AMB_RS21980 at 4751.039 kb on + strand, within AMB_RS21980 at 4751.039 kb on + strand, within AMB_RS21980 at 4751.039 kb on + strand, within AMB_RS21980 at 4751.040 kb on - strand, within AMB_RS21980
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_3 remove 4,749,395 + AMB_RS21975 0.25 -3.5 4,749,396 - AMB_RS21975 0.26 -0.5 4,749,396 - AMB_RS21975 0.26 -0.5 4,749,396 - AMB_RS21975 0.26 -0.9 4,749,400 + AMB_RS21975 0.26 -1.3 4,749,871 + AMB_RS21975 0.70 -0.0 4,749,871 + AMB_RS21975 0.70 +0.1 4,749,871 + AMB_RS21975 0.70 +1.8 4,749,871 + AMB_RS21975 0.70 +0.3 4,749,872 - AMB_RS21975 0.70 +1.2 4,749,872 - AMB_RS21975 0.70 -0.7 4,750,281 + -0.9 4,750,281 + -0.4 4,750,282 - +0.3 4,750,778 + AMB_RS21980 0.48 +1.0 4,750,779 - AMB_RS21980 0.49 +0.4 4,750,779 - AMB_RS21980 0.49 -0.2 4,750,905 + AMB_RS21980 0.62 -0.3 4,750,906 - AMB_RS21980 0.62 +0.0 4,751,039 + AMB_RS21980 0.76 -0.1 4,751,039 + AMB_RS21980 0.76 +0.6 4,751,039 + AMB_RS21980 0.76 +1.0 4,751,040 - AMB_RS21980 0.76 +0.1
Or see this region's nucleotide sequence