Experiment: 30_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21380 and AMB_RS21385 are separated by 60 nucleotides AMB_RS21385 and AMB_RS21390 are separated by 119 nucleotides AMB_RS21390 and AMB_RS21395 overlap by 4 nucleotides AMB_RS21395 and AMB_RS21400 overlap by 4 nucleotides AMB_RS21400 and AMB_RS21405 are separated by 2 nucleotides
AMB_RS21380: AMB_RS21380 - hypothetical protein, at 4,638,648 to 4,638,911
_RS21380
AMB_RS21385: AMB_RS21385 - helix-turn-helix transcriptional regulator, at 4,638,972 to 4,639,607
_RS21385
AMB_RS21390: AMB_RS21390 - hypothetical protein, at 4,639,727 to 4,640,083
_RS21390
AMB_RS21395: AMB_RS21395 - hypothetical protein, at 4,640,080 to 4,640,568
_RS21395
AMB_RS21400: AMB_RS21400 - hypothetical protein, at 4,640,565 to 4,640,807
_RS21400
AMB_RS21405: AMB_RS21405 - hypothetical protein, at 4,640,810 to 4,642,447
_RS21405
Position (kb) 4639
4640
4641 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4638.973 kb on + strand at 4639.193 kb on - strand, within AMB_RS21385 at 4639.231 kb on + strand, within AMB_RS21385 at 4639.231 kb on + strand, within AMB_RS21385 at 4639.231 kb on + strand, within AMB_RS21385 at 4639.231 kb on + strand, within AMB_RS21385 at 4639.232 kb on - strand, within AMB_RS21385 at 4639.232 kb on - strand, within AMB_RS21385 at 4639.232 kb on - strand, within AMB_RS21385 at 4639.232 kb on - strand, within AMB_RS21385 at 4639.232 kb on - strand, within AMB_RS21385 at 4639.309 kb on + strand, within AMB_RS21385 at 4639.309 kb on + strand, within AMB_RS21385 at 4639.309 kb on + strand, within AMB_RS21385 at 4639.388 kb on + strand, within AMB_RS21385 at 4639.390 kb on + strand, within AMB_RS21385 at 4639.390 kb on + strand, within AMB_RS21385 at 4639.390 kb on + strand, within AMB_RS21385 at 4639.390 kb on + strand, within AMB_RS21385 at 4639.391 kb on - strand, within AMB_RS21385 at 4639.391 kb on - strand, within AMB_RS21385 at 4639.391 kb on - strand, within AMB_RS21385 at 4639.391 kb on - strand, within AMB_RS21385 at 4639.391 kb on - strand, within AMB_RS21385 at 4639.812 kb on - strand, within AMB_RS21390 at 4639.812 kb on - strand, within AMB_RS21390 at 4640.348 kb on - strand, within AMB_RS21395 at 4640.586 kb on + strand at 4640.587 kb on - strand at 4640.972 kb on + strand at 4640.972 kb on + strand at 4640.973 kb on - strand at 4640.973 kb on - strand at 4640.973 kb on - strand at 4640.973 kb on - strand at 4640.973 kb on - strand at 4640.973 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_3 remove 4,638,973 + +2.1 4,639,193 - AMB_RS21385 0.35 -1.4 4,639,231 + AMB_RS21385 0.41 -0.7 4,639,231 + AMB_RS21385 0.41 -3.8 4,639,231 + AMB_RS21385 0.41 -1.1 4,639,231 + AMB_RS21385 0.41 +0.1 4,639,232 - AMB_RS21385 0.41 -1.3 4,639,232 - AMB_RS21385 0.41 +1.7 4,639,232 - AMB_RS21385 0.41 +0.3 4,639,232 - AMB_RS21385 0.41 -2.7 4,639,232 - AMB_RS21385 0.41 -1.8 4,639,309 + AMB_RS21385 0.53 -1.6 4,639,309 + AMB_RS21385 0.53 -1.5 4,639,309 + AMB_RS21385 0.53 -2.0 4,639,388 + AMB_RS21385 0.65 +0.8 4,639,390 + AMB_RS21385 0.66 -1.7 4,639,390 + AMB_RS21385 0.66 -3.1 4,639,390 + AMB_RS21385 0.66 -0.5 4,639,390 + AMB_RS21385 0.66 -0.5 4,639,391 - AMB_RS21385 0.66 -0.7 4,639,391 - AMB_RS21385 0.66 +0.8 4,639,391 - AMB_RS21385 0.66 -2.9 4,639,391 - AMB_RS21385 0.66 -3.0 4,639,391 - AMB_RS21385 0.66 -1.3 4,639,812 - AMB_RS21390 0.24 -0.9 4,639,812 - AMB_RS21390 0.24 -0.3 4,640,348 - AMB_RS21395 0.55 +0.3 4,640,586 + -1.5 4,640,587 - -0.6 4,640,972 + -1.9 4,640,972 + -0.0 4,640,973 - -0.8 4,640,973 - -1.3 4,640,973 - +0.1 4,640,973 - -2.0 4,640,973 - -2.1 4,640,973 - -0.2
Or see this region's nucleotide sequence