Experiment: 30_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20735 and AMB_RS20740 are separated by 109 nucleotides AMB_RS20740 and AMB_RS20745 are separated by 157 nucleotides
AMB_RS20735: AMB_RS20735 - hypothetical protein, at 4,504,481 to 4,505,512
_RS20735
AMB_RS20740: AMB_RS20740 - hypothetical protein, at 4,505,622 to 4,506,698
_RS20740
AMB_RS20745: AMB_RS20745 - DNA polymerase III subunit gamma/tau, at 4,506,856 to 4,508,646
_RS20745
Position (kb) 4505
4506
4507 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4504.659 kb on + strand, within AMB_RS20735 at 4504.659 kb on + strand, within AMB_RS20735 at 4504.660 kb on - strand, within AMB_RS20735 at 4504.881 kb on + strand, within AMB_RS20735 at 4504.882 kb on - strand, within AMB_RS20735 at 4505.061 kb on + strand, within AMB_RS20735 at 4505.061 kb on + strand, within AMB_RS20735 at 4505.061 kb on + strand, within AMB_RS20735 at 4505.062 kb on - strand, within AMB_RS20735 at 4505.062 kb on - strand, within AMB_RS20735 at 4505.062 kb on - strand, within AMB_RS20735 at 4505.062 kb on - strand, within AMB_RS20735 at 4505.091 kb on + strand, within AMB_RS20735 at 4505.091 kb on + strand, within AMB_RS20735 at 4505.091 kb on + strand, within AMB_RS20735 at 4505.091 kb on + strand, within AMB_RS20735 at 4505.092 kb on - strand, within AMB_RS20735 at 4505.130 kb on + strand, within AMB_RS20735 at 4505.131 kb on - strand, within AMB_RS20735 at 4505.131 kb on - strand, within AMB_RS20735 at 4505.131 kb on - strand, within AMB_RS20735 at 4505.178 kb on + strand, within AMB_RS20735 at 4505.179 kb on - strand, within AMB_RS20735 at 4505.226 kb on + strand, within AMB_RS20735 at 4505.226 kb on + strand, within AMB_RS20735 at 4505.227 kb on - strand, within AMB_RS20735 at 4505.227 kb on - strand, within AMB_RS20735 at 4505.227 kb on - strand, within AMB_RS20735 at 4505.235 kb on + strand, within AMB_RS20735 at 4505.235 kb on + strand, within AMB_RS20735 at 4505.235 kb on + strand, within AMB_RS20735 at 4505.235 kb on + strand, within AMB_RS20735 at 4505.236 kb on - strand, within AMB_RS20735 at 4505.236 kb on - strand, within AMB_RS20735 at 4505.236 kb on - strand, within AMB_RS20735 at 4505.438 kb on - strand at 4505.485 kb on + strand at 4505.485 kb on + strand at 4505.485 kb on + strand at 4505.485 kb on + strand at 4505.486 kb on - strand at 4505.486 kb on - strand at 4505.486 kb on - strand at 4505.515 kb on + strand at 4505.515 kb on + strand at 4505.515 kb on + strand at 4505.515 kb on + strand at 4505.516 kb on - strand at 4505.637 kb on + strand at 4505.637 kb on + strand at 4505.638 kb on - strand at 4505.638 kb on - strand at 4505.638 kb on - strand at 4506.001 kb on - strand, within AMB_RS20740 at 4506.001 kb on - strand, within AMB_RS20740 at 4506.009 kb on + strand, within AMB_RS20740 at 4506.009 kb on + strand, within AMB_RS20740 at 4506.010 kb on - strand, within AMB_RS20740 at 4506.027 kb on + strand, within AMB_RS20740 at 4506.027 kb on + strand, within AMB_RS20740 at 4506.027 kb on + strand, within AMB_RS20740 at 4506.027 kb on + strand, within AMB_RS20740 at 4506.027 kb on + strand, within AMB_RS20740 at 4506.027 kb on + strand, within AMB_RS20740 at 4506.028 kb on - strand, within AMB_RS20740 at 4506.028 kb on - strand, within AMB_RS20740 at 4506.408 kb on + strand, within AMB_RS20740 at 4506.408 kb on + strand, within AMB_RS20740 at 4506.408 kb on + strand, within AMB_RS20740 at 4506.409 kb on - strand, within AMB_RS20740 at 4506.409 kb on - strand, within AMB_RS20740 at 4506.447 kb on + strand, within AMB_RS20740 at 4506.447 kb on + strand, within AMB_RS20740 at 4506.531 kb on + strand, within AMB_RS20740 at 4506.531 kb on + strand, within AMB_RS20740 at 4506.531 kb on + strand, within AMB_RS20740 at 4506.531 kb on + strand, within AMB_RS20740 at 4506.532 kb on - strand, within AMB_RS20740 at 4506.532 kb on - strand, within AMB_RS20740 at 4506.532 kb on - strand, within AMB_RS20740 at 4506.532 kb on - strand, within AMB_RS20740 at 4506.532 kb on - strand, within AMB_RS20740 at 4506.532 kb on - strand, within AMB_RS20740 at 4506.532 kb on - strand, within AMB_RS20740 at 4506.669 kb on + strand at 4506.673 kb on - strand at 4506.703 kb on + strand at 4506.703 kb on + strand at 4506.703 kb on + strand at 4506.703 kb on + strand at 4506.703 kb on + strand at 4506.703 kb on + strand at 4506.703 kb on + strand at 4506.703 kb on + strand at 4506.703 kb on + strand at 4506.703 kb on + strand at 4506.703 kb on + strand at 4506.703 kb on + strand at 4506.703 kb on + strand at 4506.703 kb on + strand at 4506.704 kb on - strand at 4506.704 kb on - strand at 4506.704 kb on - strand at 4506.704 kb on - strand at 4506.704 kb on - strand at 4506.704 kb on - strand at 4506.704 kb on - strand at 4506.704 kb on - strand at 4506.704 kb on - strand at 4506.704 kb on - strand at 4506.705 kb on + strand at 4506.705 kb on + strand at 4506.705 kb on + strand at 4506.705 kb on + strand at 4506.705 kb on + strand at 4506.705 kb on + strand at 4506.705 kb on + strand at 4506.705 kb on + strand at 4506.706 kb on - strand at 4506.706 kb on - strand at 4506.706 kb on - strand at 4506.840 kb on + strand at 4506.840 kb on + strand at 4506.840 kb on + strand at 4506.843 kb on + strand at 4506.843 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_3 remove 4,504,659 + AMB_RS20735 0.17 +2.6 4,504,659 + AMB_RS20735 0.17 -1.0 4,504,660 - AMB_RS20735 0.17 +0.0 4,504,881 + AMB_RS20735 0.39 -3.0 4,504,882 - AMB_RS20735 0.39 -0.3 4,505,061 + AMB_RS20735 0.56 -1.9 4,505,061 + AMB_RS20735 0.56 -1.1 4,505,061 + AMB_RS20735 0.56 -2.5 4,505,062 - AMB_RS20735 0.56 -0.6 4,505,062 - AMB_RS20735 0.56 -1.1 4,505,062 - AMB_RS20735 0.56 +0.0 4,505,062 - AMB_RS20735 0.56 -0.3 4,505,091 + AMB_RS20735 0.59 -1.6 4,505,091 + AMB_RS20735 0.59 -0.2 4,505,091 + AMB_RS20735 0.59 +1.9 4,505,091 + AMB_RS20735 0.59 -0.4 4,505,092 - AMB_RS20735 0.59 -0.5 4,505,130 + AMB_RS20735 0.63 -0.0 4,505,131 - AMB_RS20735 0.63 -0.2 4,505,131 - AMB_RS20735 0.63 +0.0 4,505,131 - AMB_RS20735 0.63 -0.9 4,505,178 + AMB_RS20735 0.68 -0.6 4,505,179 - AMB_RS20735 0.68 +0.3 4,505,226 + AMB_RS20735 0.72 +0.2 4,505,226 + AMB_RS20735 0.72 -0.4 4,505,227 - AMB_RS20735 0.72 -1.6 4,505,227 - AMB_RS20735 0.72 -0.5 4,505,227 - AMB_RS20735 0.72 +0.8 4,505,235 + AMB_RS20735 0.73 +0.3 4,505,235 + AMB_RS20735 0.73 -0.3 4,505,235 + AMB_RS20735 0.73 -0.7 4,505,235 + AMB_RS20735 0.73 +0.3 4,505,236 - AMB_RS20735 0.73 -0.7 4,505,236 - AMB_RS20735 0.73 +0.2 4,505,236 - AMB_RS20735 0.73 -0.1 4,505,438 - -0.6 4,505,485 + +0.1 4,505,485 + -0.7 4,505,485 + -0.5 4,505,485 + +0.8 4,505,486 - +1.0 4,505,486 - -0.4 4,505,486 - +0.7 4,505,515 + -0.0 4,505,515 + +0.0 4,505,515 + +0.7 4,505,515 + +0.1 4,505,516 - -0.8 4,505,637 + -1.3 4,505,637 + +0.1 4,505,638 - -1.0 4,505,638 - -2.2 4,505,638 - -1.7 4,506,001 - AMB_RS20740 0.35 -3.0 4,506,001 - AMB_RS20740 0.35 -1.0 4,506,009 + AMB_RS20740 0.36 -0.6 4,506,009 + AMB_RS20740 0.36 -1.3 4,506,010 - AMB_RS20740 0.36 -0.7 4,506,027 + AMB_RS20740 0.38 -1.0 4,506,027 + AMB_RS20740 0.38 -0.3 4,506,027 + AMB_RS20740 0.38 +0.4 4,506,027 + AMB_RS20740 0.38 -0.4 4,506,027 + AMB_RS20740 0.38 -0.4 4,506,027 + AMB_RS20740 0.38 +1.0 4,506,028 - AMB_RS20740 0.38 -0.1 4,506,028 - AMB_RS20740 0.38 -1.0 4,506,408 + AMB_RS20740 0.73 -0.1 4,506,408 + AMB_RS20740 0.73 -2.6 4,506,408 + AMB_RS20740 0.73 -3.2 4,506,409 - AMB_RS20740 0.73 -0.0 4,506,409 - AMB_RS20740 0.73 -1.2 4,506,447 + AMB_RS20740 0.77 -0.6 4,506,447 + AMB_RS20740 0.77 -0.7 4,506,531 + AMB_RS20740 0.84 +0.3 4,506,531 + AMB_RS20740 0.84 -1.8 4,506,531 + AMB_RS20740 0.84 -0.3 4,506,531 + AMB_RS20740 0.84 -0.6 4,506,532 - AMB_RS20740 0.84 -0.8 4,506,532 - AMB_RS20740 0.84 -1.3 4,506,532 - AMB_RS20740 0.84 -1.3 4,506,532 - AMB_RS20740 0.84 -0.8 4,506,532 - AMB_RS20740 0.84 -2.3 4,506,532 - AMB_RS20740 0.84 -0.6 4,506,532 - AMB_RS20740 0.84 -0.9 4,506,669 + -0.0 4,506,673 - -1.1 4,506,703 + +0.3 4,506,703 + +0.2 4,506,703 + +0.4 4,506,703 + -0.3 4,506,703 + -0.4 4,506,703 + +0.1 4,506,703 + +0.2 4,506,703 + +0.3 4,506,703 + -0.6 4,506,703 + -2.6 4,506,703 + -0.4 4,506,703 + -1.8 4,506,703 + -2.7 4,506,703 + +0.2 4,506,704 - -0.2 4,506,704 - -0.1 4,506,704 - +0.0 4,506,704 - +1.0 4,506,704 - -1.3 4,506,704 - -2.9 4,506,704 - +0.0 4,506,704 - -2.2 4,506,704 - -0.1 4,506,704 - -0.2 4,506,705 + -0.4 4,506,705 + -0.5 4,506,705 + +0.2 4,506,705 + +0.2 4,506,705 + -0.0 4,506,705 + +0.2 4,506,705 + +1.9 4,506,705 + -3.2 4,506,706 - -0.1 4,506,706 - -0.5 4,506,706 - -0.5 4,506,840 + +1.5 4,506,840 + -0.1 4,506,840 + +0.1 4,506,843 + -0.1 4,506,843 + -3.3
Or see this region's nucleotide sequence