Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20705

Experiment: 30_nonmag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS20695 and AMB_RS20700 overlap by 14 nucleotidesAMB_RS20700 and AMB_RS20705 overlap by 4 nucleotidesAMB_RS20705 and AMB_RS20710 overlap by 4 nucleotidesAMB_RS20710 and AMB_RS20715 are separated by 41 nucleotides AMB_RS20695: AMB_RS20695 - 3-deoxy-D-manno-octulosonic acid transferase, at 4,494,463 to 4,495,737 _RS20695 AMB_RS20700: AMB_RS20700 - tetraacyldisaccharide 4'-kinase, at 4,495,724 to 4,496,701 _RS20700 AMB_RS20705: AMB_RS20705 - lauroyl acyltransferase, at 4,496,698 to 4,497,567 _RS20705 AMB_RS20710: AMB_RS20710 - hypothetical protein, at 4,497,564 to 4,498,484 _RS20710 AMB_RS20715: AMB_RS20715 - hypothetical protein, at 4,498,526 to 4,499,626 _RS20715 Position (kb) 4496 4497 4498Strain fitness (log2 ratio) -2 -1 0 1 2at 4496.664 kb on + strandat 4497.585 kb on + strandat 4497.725 kb on - strand, within AMB_RS20710at 4497.725 kb on - strand, within AMB_RS20710at 4497.792 kb on + strand, within AMB_RS20710at 4497.792 kb on + strand, within AMB_RS20710at 4497.792 kb on + strand, within AMB_RS20710at 4497.793 kb on - strand, within AMB_RS20710at 4498.014 kb on + strand, within AMB_RS20710at 4498.015 kb on - strand, within AMB_RS20710at 4498.015 kb on - strand, within AMB_RS20710at 4498.015 kb on - strand, within AMB_RS20710at 4498.469 kb on - strandat 4498.517 kb on + strandat 4498.517 kb on + strandat 4498.518 kb on - strandat 4498.518 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_3
remove
4,496,664 + -0.7
4,497,585 + -0.3
4,497,725 - AMB_RS20710 0.17 -0.1
4,497,725 - AMB_RS20710 0.17 -0.9
4,497,792 + AMB_RS20710 0.25 +0.3
4,497,792 + AMB_RS20710 0.25 +0.2
4,497,792 + AMB_RS20710 0.25 -1.0
4,497,793 - AMB_RS20710 0.25 +1.9
4,498,014 + AMB_RS20710 0.49 -1.3
4,498,015 - AMB_RS20710 0.49 -1.2
4,498,015 - AMB_RS20710 0.49 -0.7
4,498,015 - AMB_RS20710 0.49 -0.4
4,498,469 - +0.1
4,498,517 + -0.5
4,498,517 + -0.6
4,498,518 - +0.3
4,498,518 - -2.7

Or see this region's nucleotide sequence