Experiment: 30_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20600 and AMB_RS24710 are separated by 153 nucleotides AMB_RS24710 and AMB_RS20610 are separated by 181 nucleotides AMB_RS20610 and AMB_RS20615 are separated by 141 nucleotides AMB_RS20615 and AMB_RS20620 are separated by 31 nucleotides AMB_RS20620 and AMB_RS20625 are separated by 76 nucleotides
AMB_RS20600: AMB_RS20600 - 6-phosphofructokinase, at 4,476,656 to 4,477,870
_RS20600
AMB_RS24710: AMB_RS24710 - DUF1289 domain-containing protein, at 4,478,024 to 4,478,206
_RS24710
AMB_RS20610: AMB_RS20610 - methyl-accepting chemotaxis protein, at 4,478,388 to 4,480,592
_RS20610
AMB_RS20615: AMB_RS20615 - 50S ribosomal protein L21, at 4,480,734 to 4,481,036
_RS20615
AMB_RS20620: AMB_RS20620 - 50S ribosomal protein L27, at 4,481,068 to 4,481,337
_RS20620
AMB_RS20625: AMB_RS20625 - GTPase ObgE, at 4,481,414 to 4,482,652
_RS20625
Position (kb) 4478
4479
4480
4481 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4477.560 kb on + strand, within AMB_RS20600 at 4477.560 kb on + strand, within AMB_RS20600 at 4477.560 kb on + strand, within AMB_RS20600 at 4477.561 kb on - strand, within AMB_RS20600 at 4477.561 kb on - strand, within AMB_RS20600 at 4477.561 kb on - strand, within AMB_RS20600 at 4477.569 kb on + strand, within AMB_RS20600 at 4477.570 kb on - strand, within AMB_RS20600 at 4477.614 kb on + strand, within AMB_RS20600 at 4477.614 kb on + strand, within AMB_RS20600 at 4477.615 kb on - strand, within AMB_RS20600 at 4477.615 kb on - strand, within AMB_RS20600 at 4477.756 kb on - strand at 4477.934 kb on + strand at 4477.934 kb on + strand at 4477.934 kb on + strand at 4477.964 kb on + strand at 4477.965 kb on - strand at 4477.965 kb on - strand at 4478.138 kb on - strand, within AMB_RS24710 at 4478.384 kb on - strand at 4478.545 kb on - strand at 4478.671 kb on - strand, within AMB_RS20610 at 4478.871 kb on + strand, within AMB_RS20610 at 4478.871 kb on + strand, within AMB_RS20610 at 4478.871 kb on + strand, within AMB_RS20610 at 4478.871 kb on + strand, within AMB_RS20610 at 4478.871 kb on + strand, within AMB_RS20610 at 4478.871 kb on + strand, within AMB_RS20610 at 4478.872 kb on - strand, within AMB_RS20610 at 4478.872 kb on - strand, within AMB_RS20610 at 4478.872 kb on - strand, within AMB_RS20610 at 4478.872 kb on - strand, within AMB_RS20610 at 4478.872 kb on - strand, within AMB_RS20610 at 4478.872 kb on - strand, within AMB_RS20610 at 4478.872 kb on - strand, within AMB_RS20610 at 4478.872 kb on - strand, within AMB_RS20610 at 4479.051 kb on + strand, within AMB_RS20610 at 4479.051 kb on + strand, within AMB_RS20610 at 4479.051 kb on + strand, within AMB_RS20610 at 4479.051 kb on + strand, within AMB_RS20610 at 4479.051 kb on + strand, within AMB_RS20610 at 4479.052 kb on - strand, within AMB_RS20610 at 4479.052 kb on - strand, within AMB_RS20610 at 4479.052 kb on - strand, within AMB_RS20610 at 4479.171 kb on - strand, within AMB_RS20610 at 4479.171 kb on - strand, within AMB_RS20610 at 4479.228 kb on + strand, within AMB_RS20610 at 4479.229 kb on - strand, within AMB_RS20610 at 4479.542 kb on + strand, within AMB_RS20610 at 4479.717 kb on - strand, within AMB_RS20610 at 4481.407 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_3 remove 4,477,560 + AMB_RS20600 0.74 -0.4 4,477,560 + AMB_RS20600 0.74 -0.4 4,477,560 + AMB_RS20600 0.74 -0.4 4,477,561 - AMB_RS20600 0.74 -0.4 4,477,561 - AMB_RS20600 0.74 -0.3 4,477,561 - AMB_RS20600 0.74 -0.3 4,477,569 + AMB_RS20600 0.75 -0.5 4,477,570 - AMB_RS20600 0.75 -1.4 4,477,614 + AMB_RS20600 0.79 -0.3 4,477,614 + AMB_RS20600 0.79 -0.1 4,477,615 - AMB_RS20600 0.79 -1.3 4,477,615 - AMB_RS20600 0.79 +0.0 4,477,756 - +0.0 4,477,934 + +0.1 4,477,934 + -0.1 4,477,934 + -0.4 4,477,964 + -0.2 4,477,965 - +0.7 4,477,965 - -0.3 4,478,138 - AMB_RS24710 0.62 +0.2 4,478,384 - -3.7 4,478,545 - -3.4 4,478,671 - AMB_RS20610 0.13 -0.4 4,478,871 + AMB_RS20610 0.22 -1.6 4,478,871 + AMB_RS20610 0.22 -1.0 4,478,871 + AMB_RS20610 0.22 -2.4 4,478,871 + AMB_RS20610 0.22 -2.0 4,478,871 + AMB_RS20610 0.22 -0.6 4,478,871 + AMB_RS20610 0.22 +0.1 4,478,872 - AMB_RS20610 0.22 +0.5 4,478,872 - AMB_RS20610 0.22 +0.7 4,478,872 - AMB_RS20610 0.22 -0.1 4,478,872 - AMB_RS20610 0.22 -4.4 4,478,872 - AMB_RS20610 0.22 -0.2 4,478,872 - AMB_RS20610 0.22 -0.4 4,478,872 - AMB_RS20610 0.22 -1.5 4,478,872 - AMB_RS20610 0.22 +0.2 4,479,051 + AMB_RS20610 0.30 -1.6 4,479,051 + AMB_RS20610 0.30 +0.3 4,479,051 + AMB_RS20610 0.30 -0.5 4,479,051 + AMB_RS20610 0.30 +0.9 4,479,051 + AMB_RS20610 0.30 -1.6 4,479,052 - AMB_RS20610 0.30 -0.3 4,479,052 - AMB_RS20610 0.30 -2.6 4,479,052 - AMB_RS20610 0.30 +0.3 4,479,171 - AMB_RS20610 0.36 -0.4 4,479,171 - AMB_RS20610 0.36 +0.6 4,479,228 + AMB_RS20610 0.38 -1.0 4,479,229 - AMB_RS20610 0.38 -0.2 4,479,542 + AMB_RS20610 0.52 -2.9 4,479,717 - AMB_RS20610 0.60 -0.6 4,481,407 + -0.5
Or see this region's nucleotide sequence