Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20600

Experiment: 30_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20590 and AMB_RS20595 are separated by 15 nucleotidesAMB_RS20595 and AMB_RS20600 are separated by 157 nucleotidesAMB_RS20600 and AMB_RS24710 are separated by 153 nucleotidesAMB_RS24710 and AMB_RS20610 are separated by 181 nucleotides AMB_RS20590: AMB_RS20590 - transcription termination/antitermination protein NusA, at 4,474,471 to 4,475,982 _RS20590 AMB_RS20595: AMB_RS20595 - ribosome maturation factor, at 4,475,998 to 4,476,498 _RS20595 AMB_RS20600: AMB_RS20600 - 6-phosphofructokinase, at 4,476,656 to 4,477,870 _RS20600 AMB_RS24710: AMB_RS24710 - DUF1289 domain-containing protein, at 4,478,024 to 4,478,206 _RS24710 AMB_RS20610: AMB_RS20610 - methyl-accepting chemotaxis protein, at 4,478,388 to 4,480,592 _RS20610 Position (kb) 4476 4477 4478Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4476.280 kb on - strand, within AMB_RS20595at 4476.280 kb on - strand, within AMB_RS20595at 4476.282 kb on - strand, within AMB_RS20595at 4476.282 kb on - strand, within AMB_RS20595at 4476.441 kb on - strand, within AMB_RS20595at 4476.499 kb on - strandat 4476.499 kb on - strandat 4476.520 kb on - strandat 4476.738 kb on + strandat 4476.738 kb on + strandat 4476.738 kb on + strandat 4476.739 kb on - strandat 4476.739 kb on - strandat 4476.739 kb on - strandat 4476.739 kb on - strandat 4476.840 kb on + strand, within AMB_RS20600at 4476.840 kb on + strand, within AMB_RS20600at 4476.841 kb on - strand, within AMB_RS20600at 4476.841 kb on - strand, within AMB_RS20600at 4476.841 kb on - strand, within AMB_RS20600at 4476.841 kb on - strand, within AMB_RS20600at 4476.841 kb on - strand, within AMB_RS20600at 4476.988 kb on - strand, within AMB_RS20600at 4476.988 kb on - strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.259 kb on - strand, within AMB_RS20600at 4477.259 kb on - strand, within AMB_RS20600at 4477.259 kb on - strand, within AMB_RS20600at 4477.259 kb on - strand, within AMB_RS20600at 4477.347 kb on + strand, within AMB_RS20600at 4477.347 kb on + strand, within AMB_RS20600at 4477.347 kb on + strand, within AMB_RS20600at 4477.348 kb on - strand, within AMB_RS20600at 4477.348 kb on - strand, within AMB_RS20600at 4477.560 kb on + strand, within AMB_RS20600at 4477.560 kb on + strand, within AMB_RS20600at 4477.560 kb on + strand, within AMB_RS20600at 4477.561 kb on - strand, within AMB_RS20600at 4477.561 kb on - strand, within AMB_RS20600at 4477.561 kb on - strand, within AMB_RS20600at 4477.569 kb on + strand, within AMB_RS20600at 4477.570 kb on - strand, within AMB_RS20600at 4477.614 kb on + strand, within AMB_RS20600at 4477.614 kb on + strand, within AMB_RS20600at 4477.615 kb on - strand, within AMB_RS20600at 4477.615 kb on - strand, within AMB_RS20600at 4477.756 kb on - strandat 4477.934 kb on + strandat 4477.934 kb on + strandat 4477.934 kb on + strandat 4477.964 kb on + strandat 4477.965 kb on - strandat 4477.965 kb on - strandat 4478.138 kb on - strand, within AMB_RS24710at 4478.384 kb on - strandat 4478.545 kb on - strandat 4478.671 kb on - strand, within AMB_RS20610

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_3
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4,476,280 - AMB_RS20595 0.56 -2.0
4,476,280 - AMB_RS20595 0.56 -1.3
4,476,282 - AMB_RS20595 0.57 -0.1
4,476,282 - AMB_RS20595 0.57 -0.4
4,476,441 - AMB_RS20595 0.88 -2.0
4,476,499 - +0.2
4,476,499 - -1.3
4,476,520 - -0.2
4,476,738 + -0.0
4,476,738 + +0.8
4,476,738 + +0.9
4,476,739 - +0.1
4,476,739 - -0.8
4,476,739 - +0.4
4,476,739 - -0.7
4,476,840 + AMB_RS20600 0.15 +0.1
4,476,840 + AMB_RS20600 0.15 -0.4
4,476,841 - AMB_RS20600 0.15 -0.0
4,476,841 - AMB_RS20600 0.15 +0.5
4,476,841 - AMB_RS20600 0.15 -0.6
4,476,841 - AMB_RS20600 0.15 -2.3
4,476,841 - AMB_RS20600 0.15 -0.4
4,476,988 - AMB_RS20600 0.27 +1.2
4,476,988 - AMB_RS20600 0.27 -0.3
4,477,254 + AMB_RS20600 0.49 -0.7
4,477,254 + AMB_RS20600 0.49 +0.2
4,477,254 + AMB_RS20600 0.49 -2.9
4,477,254 + AMB_RS20600 0.49 -0.1
4,477,254 + AMB_RS20600 0.49 +0.2
4,477,254 + AMB_RS20600 0.49 -0.7
4,477,254 + AMB_RS20600 0.49 -0.1
4,477,254 + AMB_RS20600 0.49 +0.6
4,477,254 + AMB_RS20600 0.49 +1.5
4,477,254 + AMB_RS20600 0.49 +0.2
4,477,254 + AMB_RS20600 0.49 -0.1
4,477,255 - AMB_RS20600 0.49 -1.9
4,477,255 - AMB_RS20600 0.49 -0.2
4,477,255 - AMB_RS20600 0.49 -3.5
4,477,255 - AMB_RS20600 0.49 -2.3
4,477,255 - AMB_RS20600 0.49 +0.1
4,477,255 - AMB_RS20600 0.49 -0.1
4,477,255 - AMB_RS20600 0.49 -0.3
4,477,258 + AMB_RS20600 0.50 -0.3
4,477,258 + AMB_RS20600 0.50 -0.4
4,477,258 + AMB_RS20600 0.50 +0.3
4,477,258 + AMB_RS20600 0.50 -0.0
4,477,258 + AMB_RS20600 0.50 +0.0
4,477,258 + AMB_RS20600 0.50 +1.9
4,477,259 - AMB_RS20600 0.50 +2.3
4,477,259 - AMB_RS20600 0.50 -0.2
4,477,259 - AMB_RS20600 0.50 -1.0
4,477,259 - AMB_RS20600 0.50 -1.1
4,477,347 + AMB_RS20600 0.57 -0.3
4,477,347 + AMB_RS20600 0.57 -2.9
4,477,347 + AMB_RS20600 0.57 -0.8
4,477,348 - AMB_RS20600 0.57 -0.8
4,477,348 - AMB_RS20600 0.57 +1.4
4,477,560 + AMB_RS20600 0.74 -0.4
4,477,560 + AMB_RS20600 0.74 -0.4
4,477,560 + AMB_RS20600 0.74 -0.4
4,477,561 - AMB_RS20600 0.74 -0.4
4,477,561 - AMB_RS20600 0.74 -0.3
4,477,561 - AMB_RS20600 0.74 -0.3
4,477,569 + AMB_RS20600 0.75 -0.5
4,477,570 - AMB_RS20600 0.75 -1.4
4,477,614 + AMB_RS20600 0.79 -0.3
4,477,614 + AMB_RS20600 0.79 -0.1
4,477,615 - AMB_RS20600 0.79 -1.3
4,477,615 - AMB_RS20600 0.79 +0.0
4,477,756 - +0.0
4,477,934 + +0.1
4,477,934 + -0.1
4,477,934 + -0.4
4,477,964 + -0.2
4,477,965 - +0.7
4,477,965 - -0.3
4,478,138 - AMB_RS24710 0.62 +0.2
4,478,384 - -3.7
4,478,545 - -3.4
4,478,671 - AMB_RS20610 0.13 -0.4

Or see this region's nucleotide sequence