Experiment: 30_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS18695 and AMB_RS18700 are separated by 23 nucleotides AMB_RS18700 and AMB_RS18705 are separated by 258 nucleotides AMB_RS18705 and AMB_RS18710 are separated by 19 nucleotides
AMB_RS18695: AMB_RS18695 - sodium-independent anion transporter, at 4,061,074 to 4,062,783
_RS18695
AMB_RS18700: AMB_RS18700 - hypothetical protein, at 4,062,807 to 4,063,199
_RS18700
AMB_RS18705: AMB_RS18705 - response regulator, at 4,063,458 to 4,063,838
_RS18705
AMB_RS18710: AMB_RS18710 - hypothetical protein, at 4,063,858 to 4,064,724
_RS18710
Position (kb) 4062
4063
4064 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4061.858 kb on + strand, within AMB_RS18695 at 4061.858 kb on + strand, within AMB_RS18695 at 4062.099 kb on + strand, within AMB_RS18695 at 4062.100 kb on - strand, within AMB_RS18695 at 4062.372 kb on + strand, within AMB_RS18695 at 4062.802 kb on - strand at 4062.816 kb on - strand at 4062.816 kb on - strand at 4062.816 kb on - strand at 4062.905 kb on + strand, within AMB_RS18700 at 4062.975 kb on + strand, within AMB_RS18700 at 4062.976 kb on - strand, within AMB_RS18700 at 4063.043 kb on + strand, within AMB_RS18700 at 4063.043 kb on + strand, within AMB_RS18700 at 4063.043 kb on + strand, within AMB_RS18700 at 4063.044 kb on - strand, within AMB_RS18700 at 4063.129 kb on - strand, within AMB_RS18700 at 4063.348 kb on - strand at 4063.351 kb on + strand at 4063.351 kb on + strand at 4063.351 kb on + strand at 4063.351 kb on + strand at 4063.675 kb on + strand, within AMB_RS18705 at 4063.675 kb on + strand, within AMB_RS18705 at 4063.676 kb on - strand, within AMB_RS18705 at 4063.676 kb on - strand, within AMB_RS18705 at 4063.676 kb on - strand, within AMB_RS18705 at 4063.760 kb on + strand, within AMB_RS18705 at 4063.760 kb on + strand, within AMB_RS18705 at 4063.761 kb on - strand, within AMB_RS18705 at 4063.779 kb on + strand, within AMB_RS18705 at 4063.779 kb on + strand, within AMB_RS18705 at 4063.779 kb on + strand, within AMB_RS18705 at 4063.780 kb on - strand, within AMB_RS18705 at 4063.780 kb on - strand, within AMB_RS18705 at 4063.837 kb on - strand at 4063.837 kb on - strand at 4063.856 kb on + strand at 4063.857 kb on - strand at 4063.857 kb on - strand at 4063.981 kb on + strand, within AMB_RS18710 at 4064.012 kb on + strand, within AMB_RS18710 at 4064.013 kb on - strand, within AMB_RS18710 at 4064.013 kb on - strand, within AMB_RS18710 at 4064.105 kb on - strand, within AMB_RS18710 at 4064.113 kb on + strand, within AMB_RS18710 at 4064.113 kb on + strand, within AMB_RS18710 at 4064.113 kb on + strand, within AMB_RS18710 at 4064.113 kb on + strand, within AMB_RS18710 at 4064.113 kb on + strand, within AMB_RS18710 at 4064.114 kb on - strand, within AMB_RS18710 at 4064.114 kb on - strand, within AMB_RS18710 at 4064.114 kb on - strand, within AMB_RS18710 at 4064.114 kb on - strand, within AMB_RS18710
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_3 remove 4,061,858 + AMB_RS18695 0.46 -0.4 4,061,858 + AMB_RS18695 0.46 -0.0 4,062,099 + AMB_RS18695 0.60 -2.8 4,062,100 - AMB_RS18695 0.60 -0.2 4,062,372 + AMB_RS18695 0.76 +1.1 4,062,802 - -3.3 4,062,816 - -0.0 4,062,816 - +0.9 4,062,816 - -1.3 4,062,905 + AMB_RS18700 0.25 -1.1 4,062,975 + AMB_RS18700 0.43 +0.3 4,062,976 - AMB_RS18700 0.43 -0.2 4,063,043 + AMB_RS18700 0.60 +0.6 4,063,043 + AMB_RS18700 0.60 +0.0 4,063,043 + AMB_RS18700 0.60 +1.6 4,063,044 - AMB_RS18700 0.60 -1.0 4,063,129 - AMB_RS18700 0.82 +0.4 4,063,348 - -0.2 4,063,351 + +1.0 4,063,351 + +0.2 4,063,351 + -0.2 4,063,351 + -1.5 4,063,675 + AMB_RS18705 0.57 -0.0 4,063,675 + AMB_RS18705 0.57 -1.2 4,063,676 - AMB_RS18705 0.57 +0.2 4,063,676 - AMB_RS18705 0.57 -0.3 4,063,676 - AMB_RS18705 0.57 -1.3 4,063,760 + AMB_RS18705 0.79 +1.8 4,063,760 + AMB_RS18705 0.79 +0.3 4,063,761 - AMB_RS18705 0.80 -2.0 4,063,779 + AMB_RS18705 0.84 +0.8 4,063,779 + AMB_RS18705 0.84 +1.9 4,063,779 + AMB_RS18705 0.84 +0.5 4,063,780 - AMB_RS18705 0.85 -0.2 4,063,780 - AMB_RS18705 0.85 -0.4 4,063,837 - -0.7 4,063,837 - -0.9 4,063,856 + +0.4 4,063,857 - +0.2 4,063,857 - +1.7 4,063,981 + AMB_RS18710 0.14 +0.0 4,064,012 + AMB_RS18710 0.18 +0.0 4,064,013 - AMB_RS18710 0.18 +0.8 4,064,013 - AMB_RS18710 0.18 -0.0 4,064,105 - AMB_RS18710 0.28 +0.6 4,064,113 + AMB_RS18710 0.29 +1.9 4,064,113 + AMB_RS18710 0.29 -1.3 4,064,113 + AMB_RS18710 0.29 +0.4 4,064,113 + AMB_RS18710 0.29 +0.6 4,064,113 + AMB_RS18710 0.29 +0.5 4,064,114 - AMB_RS18710 0.30 -0.9 4,064,114 - AMB_RS18710 0.30 +0.3 4,064,114 - AMB_RS18710 0.30 -0.0 4,064,114 - AMB_RS18710 0.30 -0.7
Or see this region's nucleotide sequence