Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07385

Experiment: 30_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07380 and AMB_RS07385 are separated by 98 nucleotidesAMB_RS07385 and AMB_RS23290 are separated by 6 nucleotides AMB_RS07380: AMB_RS07380 - asparagine synthase, at 1,592,490 to 1,594,364 _RS07380 AMB_RS07385: AMB_RS07385 - PqqD family protein, at 1,594,463 to 1,594,726 _RS07385 AMB_RS23290: AMB_RS23290 - methyltransferase domain-containing protein, at 1,594,733 to 1,595,965 _RS23290 Position (kb) 1594 1595Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1593.585 kb on + strand, within AMB_RS07380at 1593.690 kb on + strand, within AMB_RS07380at 1593.691 kb on - strand, within AMB_RS07380at 1593.691 kb on - strand, within AMB_RS07380at 1593.691 kb on - strand, within AMB_RS07380at 1593.691 kb on - strand, within AMB_RS07380at 1593.969 kb on - strand, within AMB_RS07380at 1593.969 kb on - strand, within AMB_RS07380at 1593.969 kb on - strand, within AMB_RS07380at 1594.293 kb on + strandat 1594.294 kb on - strandat 1594.406 kb on + strandat 1594.406 kb on + strandat 1594.407 kb on - strandat 1594.407 kb on - strandat 1594.544 kb on + strand, within AMB_RS07385at 1594.545 kb on - strand, within AMB_RS07385at 1594.547 kb on + strand, within AMB_RS07385at 1594.548 kb on - strand, within AMB_RS07385at 1594.573 kb on + strand, within AMB_RS07385at 1594.637 kb on + strand, within AMB_RS07385at 1594.638 kb on - strand, within AMB_RS07385at 1594.793 kb on + strandat 1594.793 kb on + strandat 1594.794 kb on - strandat 1594.814 kb on + strandat 1594.815 kb on - strandat 1594.892 kb on + strand, within AMB_RS23290at 1594.893 kb on - strand, within AMB_RS23290at 1594.926 kb on + strand, within AMB_RS23290at 1594.926 kb on + strand, within AMB_RS23290at 1594.926 kb on + strand, within AMB_RS23290at 1594.927 kb on - strand, within AMB_RS23290at 1594.927 kb on - strand, within AMB_RS23290at 1594.927 kb on - strand, within AMB_RS23290at 1595.066 kb on + strand, within AMB_RS23290at 1595.168 kb on + strand, within AMB_RS23290at 1595.168 kb on + strand, within AMB_RS23290at 1595.168 kb on + strand, within AMB_RS23290at 1595.169 kb on - strand, within AMB_RS23290at 1595.194 kb on - strand, within AMB_RS23290at 1595.194 kb on - strand, within AMB_RS23290at 1595.194 kb on - strand, within AMB_RS23290at 1595.194 kb on - strand, within AMB_RS23290at 1595.321 kb on + strand, within AMB_RS23290at 1595.321 kb on + strand, within AMB_RS23290at 1595.408 kb on + strand, within AMB_RS23290at 1595.408 kb on + strand, within AMB_RS23290at 1595.408 kb on + strand, within AMB_RS23290at 1595.408 kb on + strand, within AMB_RS23290at 1595.408 kb on + strand, within AMB_RS23290at 1595.408 kb on + strand, within AMB_RS23290at 1595.409 kb on - strand, within AMB_RS23290

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_3
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1,593,585 + AMB_RS07380 0.58 +0.0
1,593,690 + AMB_RS07380 0.64 +0.0
1,593,691 - AMB_RS07380 0.64 -0.1
1,593,691 - AMB_RS07380 0.64 +1.0
1,593,691 - AMB_RS07380 0.64 -0.7
1,593,691 - AMB_RS07380 0.64 +3.0
1,593,969 - AMB_RS07380 0.79 -0.3
1,593,969 - AMB_RS07380 0.79 -2.1
1,593,969 - AMB_RS07380 0.79 +0.6
1,594,293 + +0.3
1,594,294 - -0.3
1,594,406 + -0.1
1,594,406 + +0.1
1,594,407 - +0.0
1,594,407 - -1.3
1,594,544 + AMB_RS07385 0.31 +1.5
1,594,545 - AMB_RS07385 0.31 +0.1
1,594,547 + AMB_RS07385 0.32 +0.7
1,594,548 - AMB_RS07385 0.32 -0.9
1,594,573 + AMB_RS07385 0.42 +1.1
1,594,637 + AMB_RS07385 0.66 -0.3
1,594,638 - AMB_RS07385 0.66 -0.1
1,594,793 + +0.8
1,594,793 + -0.2
1,594,794 - +0.8
1,594,814 + +0.3
1,594,815 - -1.3
1,594,892 + AMB_RS23290 0.13 -0.3
1,594,893 - AMB_RS23290 0.13 +0.3
1,594,926 + AMB_RS23290 0.16 +0.0
1,594,926 + AMB_RS23290 0.16 -0.4
1,594,926 + AMB_RS23290 0.16 +2.6
1,594,927 - AMB_RS23290 0.16 -0.5
1,594,927 - AMB_RS23290 0.16 +0.3
1,594,927 - AMB_RS23290 0.16 -1.6
1,595,066 + AMB_RS23290 0.27 -0.3
1,595,168 + AMB_RS23290 0.35 +0.8
1,595,168 + AMB_RS23290 0.35 -0.1
1,595,168 + AMB_RS23290 0.35 -0.4
1,595,169 - AMB_RS23290 0.35 -0.3
1,595,194 - AMB_RS23290 0.37 +0.4
1,595,194 - AMB_RS23290 0.37 -0.4
1,595,194 - AMB_RS23290 0.37 -0.7
1,595,194 - AMB_RS23290 0.37 -0.5
1,595,321 + AMB_RS23290 0.48 +0.5
1,595,321 + AMB_RS23290 0.48 +0.6
1,595,408 + AMB_RS23290 0.55 +0.5
1,595,408 + AMB_RS23290 0.55 -1.0
1,595,408 + AMB_RS23290 0.55 -0.1
1,595,408 + AMB_RS23290 0.55 -0.2
1,595,408 + AMB_RS23290 0.55 -1.7
1,595,408 + AMB_RS23290 0.55 +1.1
1,595,409 - AMB_RS23290 0.55 -1.0

Or see this region's nucleotide sequence