Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06915

Experiment: 30_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06910 and AMB_RS06915 are separated by 5 nucleotidesAMB_RS06915 and AMB_RS06920 are separated by 26 nucleotides AMB_RS06910: AMB_RS06910 - glycosyl transferase, at 1,480,602 to 1,481,765 _RS06910 AMB_RS06915: AMB_RS06915 - squalene synthase HpnD, at 1,481,771 to 1,482,631 _RS06915 AMB_RS06920: AMB_RS06920 - squalene--hopene cyclase, at 1,482,658 to 1,484,612 _RS06920 Position (kb) 1481 1482 1483Strain fitness (log2 ratio) -1 0 1 2at 1481.241 kb on + strand, within AMB_RS06910at 1481.397 kb on + strand, within AMB_RS06910at 1481.442 kb on + strand, within AMB_RS06910at 1481.589 kb on + strand, within AMB_RS06910at 1481.694 kb on + strandat 1481.694 kb on + strandat 1481.694 kb on + strandat 1481.694 kb on + strandat 1481.694 kb on + strandat 1481.694 kb on + strandat 1481.694 kb on + strandat 1481.694 kb on + strandat 1481.697 kb on + strandat 1482.629 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_3
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1,481,241 + AMB_RS06910 0.55 +0.1
1,481,397 + AMB_RS06910 0.68 +1.7
1,481,442 + AMB_RS06910 0.72 +0.4
1,481,589 + AMB_RS06910 0.85 +1.8
1,481,694 + -0.4
1,481,694 + -0.5
1,481,694 + +0.3
1,481,694 + -0.5
1,481,694 + -1.2
1,481,694 + -0.8
1,481,694 + -0.5
1,481,694 + +0.5
1,481,697 + +1.3
1,482,629 + +1.1

Or see this region's nucleotide sequence