Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05880

Experiment: 30_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05870 and AMB_RS05875 overlap by 4 nucleotidesAMB_RS05875 and AMB_RS05880 are separated by 402 nucleotidesAMB_RS05880 and AMB_RS05885 overlap by 4 nucleotidesAMB_RS05885 and AMB_RS05890 are separated by 2 nucleotides AMB_RS05870: AMB_RS05870 - hypothetical protein, at 1,238,064 to 1,238,534 _RS05870 AMB_RS05875: AMB_RS05875 - hypothetical protein, at 1,238,531 to 1,238,950 _RS05875 AMB_RS05880: AMB_RS05880 - DNA cytosine methyltransferase, at 1,239,353 to 1,241,215 _RS05880 AMB_RS05885: AMB_RS05885 - 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase/FAD synthetase, at 1,241,212 to 1,242,078 _RS05885 AMB_RS05890: AMB_RS05890 - DNA methylase, at 1,242,081 to 1,243,349 _RS05890 Position (kb) 1239 1240 1241 1242Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1238.639 kb on + strand, within AMB_RS05875at 1238.639 kb on + strand, within AMB_RS05875at 1238.639 kb on + strand, within AMB_RS05875at 1238.639 kb on + strand, within AMB_RS05875at 1238.639 kb on + strand, within AMB_RS05875at 1238.639 kb on + strand, within AMB_RS05875at 1238.639 kb on + strand, within AMB_RS05875at 1238.639 kb on + strand, within AMB_RS05875at 1238.640 kb on - strand, within AMB_RS05875at 1238.640 kb on - strand, within AMB_RS05875at 1238.640 kb on - strand, within AMB_RS05875at 1238.640 kb on - strand, within AMB_RS05875at 1238.640 kb on - strand, within AMB_RS05875at 1238.640 kb on - strand, within AMB_RS05875at 1238.640 kb on - strand, within AMB_RS05875at 1238.640 kb on - strand, within AMB_RS05875at 1238.884 kb on - strand, within AMB_RS05875at 1238.970 kb on + strandat 1239.043 kb on + strandat 1239.044 kb on - strandat 1239.044 kb on - strandat 1239.422 kb on + strandat 1239.987 kb on + strand, within AMB_RS05880at 1240.283 kb on - strand, within AMB_RS05880at 1240.658 kb on + strand, within AMB_RS05880at 1240.658 kb on + strand, within AMB_RS05880at 1240.658 kb on + strand, within AMB_RS05880at 1240.658 kb on + strand, within AMB_RS05880at 1240.658 kb on + strand, within AMB_RS05880at 1240.658 kb on + strand, within AMB_RS05880at 1240.658 kb on + strand, within AMB_RS05880at 1240.659 kb on - strand, within AMB_RS05880at 1240.659 kb on - strand, within AMB_RS05880at 1240.659 kb on - strand, within AMB_RS05880at 1240.659 kb on - strand, within AMB_RS05880at 1240.659 kb on - strand, within AMB_RS05880at 1240.659 kb on - strand, within AMB_RS05880at 1240.659 kb on - strand, within AMB_RS05880at 1240.751 kb on + strand, within AMB_RS05880at 1240.751 kb on + strand, within AMB_RS05880at 1240.751 kb on + strand, within AMB_RS05880at 1240.751 kb on + strand, within AMB_RS05880at 1240.751 kb on + strand, within AMB_RS05880at 1240.751 kb on + strand, within AMB_RS05880at 1240.751 kb on + strand, within AMB_RS05880at 1240.751 kb on + strand, within AMB_RS05880at 1240.752 kb on - strand, within AMB_RS05880at 1240.752 kb on - strand, within AMB_RS05880at 1240.752 kb on - strand, within AMB_RS05880at 1240.752 kb on - strand, within AMB_RS05880at 1240.752 kb on - strand, within AMB_RS05880at 1240.752 kb on - strand, within AMB_RS05880at 1240.752 kb on - strand, within AMB_RS05880at 1240.752 kb on - strand, within AMB_RS05880at 1241.075 kb on + strandat 1241.075 kb on + strandat 1241.076 kb on - strandat 1241.076 kb on - strandat 1241.147 kb on - strandat 1241.282 kb on - strandat 1241.473 kb on + strand, within AMB_RS05885at 1241.474 kb on - strand, within AMB_RS05885at 1241.474 kb on - strand, within AMB_RS05885at 1241.566 kb on + strand, within AMB_RS05885at 1241.567 kb on - strand, within AMB_RS05885at 1241.842 kb on + strand, within AMB_RS05885at 1241.842 kb on + strand, within AMB_RS05885at 1241.842 kb on + strand, within AMB_RS05885at 1241.842 kb on + strand, within AMB_RS05885at 1241.843 kb on - strand, within AMB_RS05885at 1241.843 kb on - strand, within AMB_RS05885

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_3
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1,238,639 + AMB_RS05875 0.26 -0.8
1,238,639 + AMB_RS05875 0.26 -0.7
1,238,639 + AMB_RS05875 0.26 +0.1
1,238,639 + AMB_RS05875 0.26 -0.6
1,238,639 + AMB_RS05875 0.26 -1.2
1,238,639 + AMB_RS05875 0.26 -0.2
1,238,639 + AMB_RS05875 0.26 -0.3
1,238,639 + AMB_RS05875 0.26 +0.1
1,238,640 - AMB_RS05875 0.26 -0.0
1,238,640 - AMB_RS05875 0.26 -1.1
1,238,640 - AMB_RS05875 0.26 -0.2
1,238,640 - AMB_RS05875 0.26 +0.4
1,238,640 - AMB_RS05875 0.26 +0.2
1,238,640 - AMB_RS05875 0.26 -0.1
1,238,640 - AMB_RS05875 0.26 +0.3
1,238,640 - AMB_RS05875 0.26 +2.9
1,238,884 - AMB_RS05875 0.84 -0.6
1,238,970 + +0.1
1,239,043 + -0.5
1,239,044 - -0.1
1,239,044 - -0.7
1,239,422 + +0.7
1,239,987 + AMB_RS05880 0.34 -0.3
1,240,283 - AMB_RS05880 0.50 -0.3
1,240,658 + AMB_RS05880 0.70 -1.4
1,240,658 + AMB_RS05880 0.70 -2.3
1,240,658 + AMB_RS05880 0.70 -1.2
1,240,658 + AMB_RS05880 0.70 -0.0
1,240,658 + AMB_RS05880 0.70 +0.4
1,240,658 + AMB_RS05880 0.70 +0.7
1,240,658 + AMB_RS05880 0.70 -0.0
1,240,659 - AMB_RS05880 0.70 +0.0
1,240,659 - AMB_RS05880 0.70 -1.2
1,240,659 - AMB_RS05880 0.70 -0.6
1,240,659 - AMB_RS05880 0.70 -0.5
1,240,659 - AMB_RS05880 0.70 -0.6
1,240,659 - AMB_RS05880 0.70 +0.4
1,240,659 - AMB_RS05880 0.70 -0.5
1,240,751 + AMB_RS05880 0.75 -0.2
1,240,751 + AMB_RS05880 0.75 -0.8
1,240,751 + AMB_RS05880 0.75 -0.2
1,240,751 + AMB_RS05880 0.75 -2.0
1,240,751 + AMB_RS05880 0.75 -0.3
1,240,751 + AMB_RS05880 0.75 -0.2
1,240,751 + AMB_RS05880 0.75 +0.6
1,240,751 + AMB_RS05880 0.75 +0.1
1,240,752 - AMB_RS05880 0.75 -1.2
1,240,752 - AMB_RS05880 0.75 +0.0
1,240,752 - AMB_RS05880 0.75 -0.2
1,240,752 - AMB_RS05880 0.75 -0.7
1,240,752 - AMB_RS05880 0.75 +0.3
1,240,752 - AMB_RS05880 0.75 -1.3
1,240,752 - AMB_RS05880 0.75 -1.2
1,240,752 - AMB_RS05880 0.75 -0.8
1,241,075 + +0.4
1,241,075 + -1.6
1,241,076 - -0.5
1,241,076 - +0.1
1,241,147 - -0.2
1,241,282 - -0.6
1,241,473 + AMB_RS05885 0.30 -0.9
1,241,474 - AMB_RS05885 0.30 -1.5
1,241,474 - AMB_RS05885 0.30 -0.2
1,241,566 + AMB_RS05885 0.41 -0.7
1,241,567 - AMB_RS05885 0.41 +0.7
1,241,842 + AMB_RS05885 0.73 -0.3
1,241,842 + AMB_RS05885 0.73 -0.7
1,241,842 + AMB_RS05885 0.73 -0.7
1,241,842 + AMB_RS05885 0.73 -0.5
1,241,843 - AMB_RS05885 0.73 +0.2
1,241,843 - AMB_RS05885 0.73 -0.0

Or see this region's nucleotide sequence