Experiment: 30_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04660 and AMB_RS04665 overlap by 19 nucleotides AMB_RS04665 and AMB_RS04670 are separated by 429 nucleotides AMB_RS04670 and AMB_RS04675 are separated by 27 nucleotides AMB_RS04675 and AMB_RS04680 are separated by 128 nucleotides AMB_RS04680 and AMB_RS04685 are separated by 169 nucleotides
AMB_RS04660: AMB_RS04660 - VWA domain-containing protein, at 975,797 to 977,311
_RS04660
AMB_RS04665: AMB_RS04665 - hypothetical protein, at 977,293 to 977,532
_RS04665
AMB_RS04670: AMB_RS04670 - signal transduction histidine kinase, at 977,962 to 978,675
_RS04670
AMB_RS04675: AMB_RS04675 - hypothetical protein, at 978,703 to 978,891
_RS04675
AMB_RS04680: AMB_RS04680 - transposase, at 979,020 to 979,286
_RS04680
AMB_RS04685: AMB_RS04685 - DNA-binding response regulator, at 979,456 to 980,070
_RS04685
Position (kb) 977
978
979 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 977.007 kb on + strand, within AMB_RS04660 at 977.007 kb on + strand, within AMB_RS04660 at 977.114 kb on + strand, within AMB_RS04660 at 977.114 kb on + strand, within AMB_RS04660 at 977.114 kb on + strand, within AMB_RS04660 at 977.114 kb on + strand, within AMB_RS04660 at 977.114 kb on + strand, within AMB_RS04660 at 977.114 kb on + strand, within AMB_RS04660 at 977.115 kb on - strand, within AMB_RS04660 at 977.115 kb on - strand, within AMB_RS04660 at 977.115 kb on - strand, within AMB_RS04660 at 977.115 kb on - strand, within AMB_RS04660 at 977.115 kb on - strand, within AMB_RS04660 at 977.115 kb on - strand, within AMB_RS04660 at 977.115 kb on - strand, within AMB_RS04660 at 977.115 kb on - strand, within AMB_RS04660 at 977.115 kb on - strand, within AMB_RS04660 at 977.303 kb on - strand at 977.326 kb on - strand, within AMB_RS04665 at 977.327 kb on + strand, within AMB_RS04665 at 977.327 kb on + strand, within AMB_RS04665 at 977.327 kb on + strand, within AMB_RS04665 at 977.327 kb on + strand, within AMB_RS04665 at 977.327 kb on + strand, within AMB_RS04665 at 977.328 kb on - strand, within AMB_RS04665 at 977.328 kb on - strand, within AMB_RS04665 at 977.353 kb on + strand, within AMB_RS04665 at 977.550 kb on + strand at 977.570 kb on + strand at 977.571 kb on - strand at 977.622 kb on - strand at 977.622 kb on - strand at 977.622 kb on - strand at 977.644 kb on + strand at 977.723 kb on + strand at 977.723 kb on + strand at 977.723 kb on + strand at 977.819 kb on + strand at 977.819 kb on + strand at 977.991 kb on + strand at 977.991 kb on + strand at 977.991 kb on + strand at 977.991 kb on + strand at 977.992 kb on - strand at 977.996 kb on + strand at 977.996 kb on + strand at 977.996 kb on + strand at 977.997 kb on - strand at 978.098 kb on + strand, within AMB_RS04670 at 978.098 kb on + strand, within AMB_RS04670 at 978.149 kb on + strand, within AMB_RS04670 at 978.150 kb on - strand, within AMB_RS04670 at 978.238 kb on + strand, within AMB_RS04670 at 978.238 kb on + strand, within AMB_RS04670 at 978.238 kb on + strand, within AMB_RS04670 at 978.238 kb on + strand, within AMB_RS04670 at 978.238 kb on + strand, within AMB_RS04670 at 978.239 kb on - strand, within AMB_RS04670 at 978.239 kb on - strand, within AMB_RS04670 at 978.239 kb on - strand, within AMB_RS04670 at 978.239 kb on - strand, within AMB_RS04670 at 978.387 kb on + strand, within AMB_RS04670 at 978.387 kb on + strand, within AMB_RS04670 at 978.387 kb on + strand, within AMB_RS04670 at 978.387 kb on + strand, within AMB_RS04670 at 978.387 kb on + strand, within AMB_RS04670 at 978.387 kb on + strand, within AMB_RS04670 at 978.388 kb on - strand, within AMB_RS04670 at 978.388 kb on - strand, within AMB_RS04670 at 978.388 kb on - strand, within AMB_RS04670 at 978.388 kb on - strand, within AMB_RS04670 at 978.391 kb on + strand, within AMB_RS04670 at 978.392 kb on - strand, within AMB_RS04670 at 978.432 kb on + strand, within AMB_RS04670 at 978.432 kb on + strand, within AMB_RS04670 at 978.432 kb on + strand, within AMB_RS04670 at 978.433 kb on - strand, within AMB_RS04670 at 978.433 kb on - strand, within AMB_RS04670 at 978.447 kb on + strand, within AMB_RS04670 at 978.447 kb on + strand, within AMB_RS04670 at 978.460 kb on + strand, within AMB_RS04670 at 978.522 kb on + strand, within AMB_RS04670 at 978.522 kb on + strand, within AMB_RS04670 at 978.522 kb on + strand, within AMB_RS04670 at 978.581 kb on + strand, within AMB_RS04670 at 978.581 kb on + strand, within AMB_RS04670 at 978.582 kb on - strand, within AMB_RS04670 at 978.582 kb on - strand, within AMB_RS04670 at 978.582 kb on - strand, within AMB_RS04670 at 978.582 kb on - strand, within AMB_RS04670 at 978.629 kb on + strand at 978.629 kb on + strand at 978.629 kb on + strand at 978.629 kb on + strand at 978.629 kb on + strand at 978.629 kb on + strand at 978.629 kb on + strand at 978.629 kb on + strand at 978.629 kb on + strand at 978.630 kb on - strand at 978.630 kb on - strand at 978.630 kb on - strand at 978.630 kb on - strand at 978.630 kb on - strand at 978.655 kb on + strand at 978.656 kb on - strand at 978.656 kb on - strand at 978.976 kb on + strand at 978.977 kb on - strand at 979.003 kb on - strand at 979.153 kb on + strand, within AMB_RS04680 at 979.153 kb on + strand, within AMB_RS04680 at 979.154 kb on - strand, within AMB_RS04680 at 979.171 kb on + strand, within AMB_RS04680 at 979.171 kb on + strand, within AMB_RS04680 at 979.286 kb on + strand at 979.286 kb on + strand at 979.286 kb on + strand at 979.286 kb on + strand at 979.286 kb on + strand at 979.286 kb on + strand at 979.286 kb on + strand at 979.286 kb on + strand at 979.287 kb on - strand at 979.287 kb on - strand at 979.287 kb on - strand at 979.287 kb on - strand at 979.287 kb on - strand at 979.315 kb on + strand at 979.316 kb on - strand at 979.330 kb on - strand at 979.376 kb on - strand at 979.445 kb on + strand at 979.445 kb on + strand at 979.457 kb on + strand at 979.483 kb on - strand at 979.504 kb on + strand at 979.505 kb on - strand at 979.507 kb on + strand at 979.508 kb on - strand at 979.558 kb on - strand, within AMB_RS04685 at 979.561 kb on + strand, within AMB_RS04685 at 979.561 kb on + strand, within AMB_RS04685 at 979.562 kb on - strand, within AMB_RS04685 at 979.588 kb on + strand, within AMB_RS04685 at 979.629 kb on + strand, within AMB_RS04685 at 979.629 kb on + strand, within AMB_RS04685 at 979.630 kb on - strand, within AMB_RS04685
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_3 remove 977,007 + AMB_RS04660 0.80 -1.3 977,007 + AMB_RS04660 0.80 -0.9 977,114 + AMB_RS04660 0.87 -0.2 977,114 + AMB_RS04660 0.87 -0.0 977,114 + AMB_RS04660 0.87 -0.5 977,114 + AMB_RS04660 0.87 -1.3 977,114 + AMB_RS04660 0.87 -0.5 977,114 + AMB_RS04660 0.87 +0.2 977,115 - AMB_RS04660 0.87 +1.9 977,115 - AMB_RS04660 0.87 -0.7 977,115 - AMB_RS04660 0.87 -0.2 977,115 - AMB_RS04660 0.87 -1.7 977,115 - AMB_RS04660 0.87 -1.6 977,115 - AMB_RS04660 0.87 -0.2 977,115 - AMB_RS04660 0.87 +0.1 977,115 - AMB_RS04660 0.87 -0.2 977,115 - AMB_RS04660 0.87 +0.1 977,303 - -3.2 977,326 - AMB_RS04665 0.14 -0.2 977,327 + AMB_RS04665 0.14 -0.1 977,327 + AMB_RS04665 0.14 +0.2 977,327 + AMB_RS04665 0.14 -0.1 977,327 + AMB_RS04665 0.14 +1.3 977,327 + AMB_RS04665 0.14 -0.1 977,328 - AMB_RS04665 0.15 +0.3 977,328 - AMB_RS04665 0.15 -0.4 977,353 + AMB_RS04665 0.25 -0.3 977,550 + -0.8 977,570 + -0.1 977,571 - -0.2 977,622 - -0.3 977,622 - -0.3 977,622 - -0.4 977,644 + -0.4 977,723 + +0.2 977,723 + -0.3 977,723 + +1.3 977,819 + -1.3 977,819 + -0.2 977,991 + -0.3 977,991 + -1.0 977,991 + +0.3 977,991 + -1.7 977,992 - -0.3 977,996 + -0.2 977,996 + +0.3 977,996 + -0.2 977,997 - -3.0 978,098 + AMB_RS04670 0.19 -0.4 978,098 + AMB_RS04670 0.19 -0.4 978,149 + AMB_RS04670 0.26 -0.8 978,150 - AMB_RS04670 0.26 -0.3 978,238 + AMB_RS04670 0.39 -1.1 978,238 + AMB_RS04670 0.39 +0.3 978,238 + AMB_RS04670 0.39 -0.7 978,238 + AMB_RS04670 0.39 -0.5 978,238 + AMB_RS04670 0.39 -0.4 978,239 - AMB_RS04670 0.39 -0.3 978,239 - AMB_RS04670 0.39 -2.7 978,239 - AMB_RS04670 0.39 -0.6 978,239 - AMB_RS04670 0.39 +0.4 978,387 + AMB_RS04670 0.60 -1.7 978,387 + AMB_RS04670 0.60 -1.0 978,387 + AMB_RS04670 0.60 +0.0 978,387 + AMB_RS04670 0.60 -1.2 978,387 + AMB_RS04670 0.60 -0.0 978,387 + AMB_RS04670 0.60 -0.4 978,388 - AMB_RS04670 0.60 -0.5 978,388 - AMB_RS04670 0.60 -0.3 978,388 - AMB_RS04670 0.60 -1.1 978,388 - AMB_RS04670 0.60 -0.1 978,391 + AMB_RS04670 0.60 -0.9 978,392 - AMB_RS04670 0.60 +0.1 978,432 + AMB_RS04670 0.66 +0.5 978,432 + AMB_RS04670 0.66 -0.5 978,432 + AMB_RS04670 0.66 -0.6 978,433 - AMB_RS04670 0.66 -0.1 978,433 - AMB_RS04670 0.66 +0.6 978,447 + AMB_RS04670 0.68 -0.5 978,447 + AMB_RS04670 0.68 -0.6 978,460 + AMB_RS04670 0.70 +0.3 978,522 + AMB_RS04670 0.78 -0.5 978,522 + AMB_RS04670 0.78 -0.7 978,522 + AMB_RS04670 0.78 +1.2 978,581 + AMB_RS04670 0.87 +0.2 978,581 + AMB_RS04670 0.87 -1.5 978,582 - AMB_RS04670 0.87 +0.8 978,582 - AMB_RS04670 0.87 -0.0 978,582 - AMB_RS04670 0.87 -0.3 978,582 - AMB_RS04670 0.87 -0.7 978,629 + -0.9 978,629 + -0.9 978,629 + +0.1 978,629 + +0.0 978,629 + +0.2 978,629 + -0.7 978,629 + -0.2 978,629 + -1.7 978,629 + -0.6 978,630 - -0.3 978,630 - -0.4 978,630 - -1.9 978,630 - -0.0 978,630 - -0.7 978,655 + -2.5 978,656 - -0.9 978,656 - -0.1 978,976 + -1.1 978,977 - -0.4 979,003 - +2.6 979,153 + AMB_RS04680 0.50 -0.5 979,153 + AMB_RS04680 0.50 -2.0 979,154 - AMB_RS04680 0.50 -1.1 979,171 + AMB_RS04680 0.57 -1.6 979,171 + AMB_RS04680 0.57 +1.4 979,286 + +0.1 979,286 + -0.3 979,286 + +0.1 979,286 + -0.9 979,286 + -0.1 979,286 + -0.6 979,286 + -0.1 979,286 + -0.4 979,287 - -0.1 979,287 - -0.2 979,287 - -0.8 979,287 - -2.2 979,287 - -0.3 979,315 + -0.2 979,316 - +0.4 979,330 - +0.1 979,376 - -0.8 979,445 + -0.3 979,445 + +1.0 979,457 + -2.0 979,483 - +0.1 979,504 + +0.2 979,505 - +0.3 979,507 + +0.1 979,508 - -1.4 979,558 - AMB_RS04685 0.17 -2.8 979,561 + AMB_RS04685 0.17 -0.3 979,561 + AMB_RS04685 0.17 -1.0 979,562 - AMB_RS04685 0.17 +0.6 979,588 + AMB_RS04685 0.21 +0.4 979,629 + AMB_RS04685 0.28 -2.5 979,629 + AMB_RS04685 0.28 +0.1 979,630 - AMB_RS04685 0.28 -0.3
Or see this region's nucleotide sequence