Experiment: 30_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04595 and AMB_RS04600 are separated by 266 nucleotides AMB_RS04600 and AMB_RS04605 are separated by 825 nucleotides
AMB_RS04595: AMB_RS04595 - peptidase, at 961,677 to 962,414
_RS04595
AMB_RS04600: AMB_RS04600 - membrane protein, at 962,681 to 964,069
_RS04600
AMB_RS04605: AMB_RS04605 - 16S ribosomal RNA, at 964,895 to 966,392
_RS04605
Position (kb) 962
963
964
965 Strain fitness (log2 ratio) -2
-1
0
1 at 961.683 kb on + strand at 961.683 kb on + strand at 961.683 kb on + strand at 961.683 kb on + strand at 961.683 kb on + strand at 961.683 kb on + strand at 961.683 kb on + strand at 961.684 kb on - strand at 961.684 kb on - strand at 961.684 kb on - strand at 961.779 kb on + strand, within AMB_RS04595 at 961.779 kb on + strand, within AMB_RS04595 at 961.780 kb on - strand, within AMB_RS04595 at 961.780 kb on - strand, within AMB_RS04595 at 961.906 kb on - strand, within AMB_RS04595 at 961.906 kb on - strand, within AMB_RS04595 at 961.923 kb on + strand, within AMB_RS04595 at 961.923 kb on + strand, within AMB_RS04595 at 961.923 kb on + strand, within AMB_RS04595 at 961.924 kb on - strand, within AMB_RS04595 at 961.924 kb on - strand, within AMB_RS04595 at 961.924 kb on - strand, within AMB_RS04595 at 962.070 kb on + strand, within AMB_RS04595 at 962.071 kb on - strand, within AMB_RS04595 at 962.071 kb on - strand, within AMB_RS04595 at 962.136 kb on + strand, within AMB_RS04595 at 962.137 kb on - strand, within AMB_RS04595 at 962.329 kb on - strand, within AMB_RS04595 at 962.454 kb on + strand at 962.454 kb on + strand at 962.455 kb on - strand at 962.455 kb on - strand at 962.455 kb on - strand at 962.455 kb on - strand at 962.483 kb on + strand at 962.484 kb on - strand at 962.484 kb on - strand at 962.484 kb on - strand at 962.569 kb on + strand at 962.595 kb on - strand at 964.088 kb on - strand at 964.088 kb on - strand at 964.091 kb on - strand at 964.091 kb on - strand at 964.091 kb on - strand at 964.091 kb on - strand at 964.091 kb on - strand at 964.091 kb on - strand at 964.153 kb on - strand at 964.153 kb on - strand at 964.155 kb on - strand at 964.155 kb on - strand at 964.225 kb on + strand at 964.225 kb on + strand at 964.226 kb on - strand at 964.226 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_3 remove 961,683 + -0.3 961,683 + -0.4 961,683 + +0.9 961,683 + -1.7 961,683 + +0.2 961,683 + -0.6 961,683 + -0.4 961,684 - -1.4 961,684 - +0.0 961,684 - -1.0 961,779 + AMB_RS04595 0.14 -0.3 961,779 + AMB_RS04595 0.14 +0.6 961,780 - AMB_RS04595 0.14 -0.5 961,780 - AMB_RS04595 0.14 -0.1 961,906 - AMB_RS04595 0.31 +0.2 961,906 - AMB_RS04595 0.31 +0.0 961,923 + AMB_RS04595 0.33 +0.2 961,923 + AMB_RS04595 0.33 -0.0 961,923 + AMB_RS04595 0.33 +0.9 961,924 - AMB_RS04595 0.33 +0.1 961,924 - AMB_RS04595 0.33 -1.0 961,924 - AMB_RS04595 0.33 -1.3 962,070 + AMB_RS04595 0.53 -0.1 962,071 - AMB_RS04595 0.53 -0.1 962,071 - AMB_RS04595 0.53 +0.2 962,136 + AMB_RS04595 0.62 -0.1 962,137 - AMB_RS04595 0.62 +0.5 962,329 - AMB_RS04595 0.88 +0.4 962,454 + -1.6 962,454 + -0.4 962,455 - -2.0 962,455 - -0.8 962,455 - +0.5 962,455 - -0.0 962,483 + -0.9 962,484 - +0.8 962,484 - +0.1 962,484 - +0.7 962,569 + +0.7 962,595 - +0.5 964,088 - -1.4 964,088 - -0.4 964,091 - +0.1 964,091 - +0.2 964,091 - -1.3 964,091 - +0.2 964,091 - +0.4 964,091 - +0.2 964,153 - -0.0 964,153 - +0.6 964,155 - -0.1 964,155 - +0.2 964,225 + -2.7 964,225 + +1.7 964,226 - +0.6 964,226 - -0.8
Or see this region's nucleotide sequence