Experiment: 30_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04310 and AMB_RS04315 are separated by 48 nucleotides AMB_RS04315 and AMB_RS04320 are separated by 62 nucleotides AMB_RS04320 and AMB_RS04325 are separated by 3 nucleotides
AMB_RS04310: AMB_RS04310 - receptor protein, at 905,211 to 907,154
_RS04310
AMB_RS04315: AMB_RS04315 - PAS domain S-box protein, at 907,203 to 909,743
_RS04315
AMB_RS04320: AMB_RS04320 - DNA-binding response regulator, at 909,806 to 910,528
_RS04320
AMB_RS04325: AMB_RS04325 - TetR/AcrR family transcriptional regulator, at 910,532 to 911,140
_RS04325
Position (kb) 907
908
909
910 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 906.317 kb on - strand, within AMB_RS04310 at 906.340 kb on + strand, within AMB_RS04310 at 906.341 kb on - strand, within AMB_RS04310 at 906.372 kb on - strand, within AMB_RS04310 at 906.440 kb on - strand, within AMB_RS04310 at 906.440 kb on - strand, within AMB_RS04310 at 906.490 kb on + strand, within AMB_RS04310 at 906.490 kb on + strand, within AMB_RS04310 at 906.490 kb on + strand, within AMB_RS04310 at 906.490 kb on + strand, within AMB_RS04310 at 906.490 kb on + strand, within AMB_RS04310 at 906.491 kb on - strand, within AMB_RS04310 at 906.491 kb on - strand, within AMB_RS04310 at 906.491 kb on - strand, within AMB_RS04310 at 906.491 kb on - strand, within AMB_RS04310 at 906.508 kb on - strand, within AMB_RS04310 at 906.508 kb on - strand, within AMB_RS04310 at 906.607 kb on + strand, within AMB_RS04310 at 906.715 kb on + strand, within AMB_RS04310 at 906.721 kb on + strand, within AMB_RS04310 at 906.722 kb on - strand, within AMB_RS04310 at 906.752 kb on - strand, within AMB_RS04310 at 907.013 kb on + strand at 907.014 kb on - strand at 907.014 kb on - strand at 907.015 kb on + strand at 907.015 kb on + strand at 907.015 kb on + strand at 907.015 kb on + strand at 907.016 kb on - strand at 907.016 kb on - strand at 907.016 kb on - strand at 907.016 kb on - strand at 907.016 kb on - strand at 907.161 kb on + strand at 907.162 kb on - strand at 907.167 kb on + strand at 907.167 kb on + strand at 907.167 kb on + strand at 907.168 kb on - strand at 907.509 kb on + strand, within AMB_RS04315 at 907.617 kb on + strand, within AMB_RS04315 at 907.617 kb on + strand, within AMB_RS04315 at 907.617 kb on + strand, within AMB_RS04315 at 907.618 kb on - strand, within AMB_RS04315 at 907.618 kb on - strand, within AMB_RS04315 at 907.618 kb on - strand, within AMB_RS04315 at 907.749 kb on + strand, within AMB_RS04315 at 907.749 kb on + strand, within AMB_RS04315 at 907.779 kb on - strand, within AMB_RS04315 at 907.779 kb on - strand, within AMB_RS04315 at 907.899 kb on + strand, within AMB_RS04315 at 907.923 kb on + strand, within AMB_RS04315 at 907.923 kb on + strand, within AMB_RS04315 at 907.923 kb on + strand, within AMB_RS04315 at 907.923 kb on + strand, within AMB_RS04315 at 907.924 kb on - strand, within AMB_RS04315 at 907.924 kb on - strand, within AMB_RS04315 at 907.924 kb on - strand, within AMB_RS04315 at 907.924 kb on - strand, within AMB_RS04315 at 907.924 kb on - strand, within AMB_RS04315 at 908.128 kb on + strand, within AMB_RS04315 at 908.128 kb on + strand, within AMB_RS04315 at 908.129 kb on - strand, within AMB_RS04315 at 908.129 kb on - strand, within AMB_RS04315 at 908.130 kb on + strand, within AMB_RS04315 at 908.130 kb on + strand, within AMB_RS04315 at 908.130 kb on + strand, within AMB_RS04315 at 908.130 kb on + strand, within AMB_RS04315 at 908.130 kb on + strand, within AMB_RS04315 at 908.130 kb on + strand, within AMB_RS04315 at 908.130 kb on + strand, within AMB_RS04315 at 908.131 kb on - strand, within AMB_RS04315 at 908.131 kb on - strand, within AMB_RS04315 at 908.131 kb on - strand, within AMB_RS04315 at 908.131 kb on - strand, within AMB_RS04315 at 908.131 kb on - strand, within AMB_RS04315 at 908.131 kb on - strand, within AMB_RS04315 at 908.131 kb on - strand, within AMB_RS04315 at 908.131 kb on - strand, within AMB_RS04315 at 908.131 kb on - strand, within AMB_RS04315 at 908.131 kb on - strand, within AMB_RS04315 at 908.296 kb on - strand, within AMB_RS04315 at 908.714 kb on - strand, within AMB_RS04315 at 908.920 kb on - strand, within AMB_RS04315 at 908.920 kb on - strand, within AMB_RS04315 at 909.135 kb on + strand, within AMB_RS04315 at 909.136 kb on - strand, within AMB_RS04315 at 909.136 kb on - strand, within AMB_RS04315 at 909.170 kb on - strand, within AMB_RS04315 at 909.170 kb on - strand, within AMB_RS04315 at 909.559 kb on - strand at 909.606 kb on + strand at 909.606 kb on + strand at 909.607 kb on - strand at 909.607 kb on - strand at 909.607 kb on - strand at 909.607 kb on - strand at 909.607 kb on - strand at 909.679 kb on + strand at 909.680 kb on - strand at 909.688 kb on + strand at 909.689 kb on - strand at 909.762 kb on - strand at 909.817 kb on - strand at 909.854 kb on - strand at 909.854 kb on - strand at 909.863 kb on + strand at 909.863 kb on + strand at 910.097 kb on + strand, within AMB_RS04320 at 910.097 kb on + strand, within AMB_RS04320 at 910.097 kb on + strand, within AMB_RS04320 at 910.098 kb on - strand, within AMB_RS04320 at 910.379 kb on + strand, within AMB_RS04320 at 910.390 kb on + strand, within AMB_RS04320 at 910.391 kb on - strand, within AMB_RS04320 at 910.391 kb on - strand, within AMB_RS04320 at 910.391 kb on - strand, within AMB_RS04320 at 910.481 kb on + strand at 910.482 kb on - strand at 910.482 kb on - strand at 910.482 kb on - strand at 910.527 kb on - strand at 910.604 kb on + strand, within AMB_RS04325 at 910.605 kb on - strand, within AMB_RS04325 at 910.605 kb on - strand, within AMB_RS04325 at 910.676 kb on + strand, within AMB_RS04325 at 910.676 kb on + strand, within AMB_RS04325 at 910.676 kb on + strand, within AMB_RS04325 at 910.677 kb on - strand, within AMB_RS04325 at 910.677 kb on - strand, within AMB_RS04325 at 910.709 kb on + strand, within AMB_RS04325 at 910.710 kb on - strand, within AMB_RS04325 at 910.729 kb on + strand, within AMB_RS04325 at 910.729 kb on + strand, within AMB_RS04325
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_3 remove 906,317 - AMB_RS04310 0.57 -2.6 906,340 + AMB_RS04310 0.58 +0.8 906,341 - AMB_RS04310 0.58 -1.2 906,372 - AMB_RS04310 0.60 -0.2 906,440 - AMB_RS04310 0.63 -0.4 906,440 - AMB_RS04310 0.63 -0.5 906,490 + AMB_RS04310 0.66 -0.3 906,490 + AMB_RS04310 0.66 +0.0 906,490 + AMB_RS04310 0.66 -0.4 906,490 + AMB_RS04310 0.66 +1.3 906,490 + AMB_RS04310 0.66 -0.0 906,491 - AMB_RS04310 0.66 -0.1 906,491 - AMB_RS04310 0.66 +0.1 906,491 - AMB_RS04310 0.66 -0.4 906,491 - AMB_RS04310 0.66 +1.9 906,508 - AMB_RS04310 0.67 -0.5 906,508 - AMB_RS04310 0.67 -1.3 906,607 + AMB_RS04310 0.72 -0.2 906,715 + AMB_RS04310 0.77 -0.0 906,721 + AMB_RS04310 0.78 -0.3 906,722 - AMB_RS04310 0.78 +1.4 906,752 - AMB_RS04310 0.79 +0.4 907,013 + -1.8 907,014 - +3.1 907,014 - -0.0 907,015 + +0.3 907,015 + -0.5 907,015 + -0.4 907,015 + -0.2 907,016 - -0.0 907,016 - +2.6 907,016 - -0.7 907,016 - +1.1 907,016 - +0.3 907,161 + -0.6 907,162 - -0.3 907,167 + -1.1 907,167 + +0.4 907,167 + +1.0 907,168 - -1.7 907,509 + AMB_RS04315 0.12 -1.5 907,617 + AMB_RS04315 0.16 +0.3 907,617 + AMB_RS04315 0.16 +0.1 907,617 + AMB_RS04315 0.16 +0.1 907,618 - AMB_RS04315 0.16 +0.4 907,618 - AMB_RS04315 0.16 -0.6 907,618 - AMB_RS04315 0.16 -0.1 907,749 + AMB_RS04315 0.21 -0.3 907,749 + AMB_RS04315 0.21 -0.5 907,779 - AMB_RS04315 0.23 +0.2 907,779 - AMB_RS04315 0.23 +0.5 907,899 + AMB_RS04315 0.27 +0.2 907,923 + AMB_RS04315 0.28 +0.5 907,923 + AMB_RS04315 0.28 -1.3 907,923 + AMB_RS04315 0.28 +0.2 907,923 + AMB_RS04315 0.28 +0.8 907,924 - AMB_RS04315 0.28 +0.2 907,924 - AMB_RS04315 0.28 -0.1 907,924 - AMB_RS04315 0.28 +1.0 907,924 - AMB_RS04315 0.28 +3.5 907,924 - AMB_RS04315 0.28 +0.9 908,128 + AMB_RS04315 0.36 +0.3 908,128 + AMB_RS04315 0.36 -0.8 908,129 - AMB_RS04315 0.36 -0.1 908,129 - AMB_RS04315 0.36 -0.4 908,130 + AMB_RS04315 0.36 -0.8 908,130 + AMB_RS04315 0.36 -0.3 908,130 + AMB_RS04315 0.36 +0.3 908,130 + AMB_RS04315 0.36 +0.3 908,130 + AMB_RS04315 0.36 -1.3 908,130 + AMB_RS04315 0.36 -0.5 908,130 + AMB_RS04315 0.36 +2.2 908,131 - AMB_RS04315 0.37 -1.7 908,131 - AMB_RS04315 0.37 +1.4 908,131 - AMB_RS04315 0.37 -1.3 908,131 - AMB_RS04315 0.37 -0.2 908,131 - AMB_RS04315 0.37 -1.1 908,131 - AMB_RS04315 0.37 -1.4 908,131 - AMB_RS04315 0.37 +0.6 908,131 - AMB_RS04315 0.37 +0.4 908,131 - AMB_RS04315 0.37 +0.4 908,131 - AMB_RS04315 0.37 -0.7 908,296 - AMB_RS04315 0.43 +0.3 908,714 - AMB_RS04315 0.59 -1.3 908,920 - AMB_RS04315 0.68 +0.1 908,920 - AMB_RS04315 0.68 -0.7 909,135 + AMB_RS04315 0.76 -0.9 909,136 - AMB_RS04315 0.76 -0.3 909,136 - AMB_RS04315 0.76 -0.3 909,170 - AMB_RS04315 0.77 -1.0 909,170 - AMB_RS04315 0.77 +0.0 909,559 - -0.3 909,606 + -1.0 909,606 + +0.2 909,607 - -0.9 909,607 - -0.3 909,607 - -0.3 909,607 - +2.3 909,607 - +0.6 909,679 + +0.2 909,680 - +0.5 909,688 + -1.1 909,689 - -0.3 909,762 - +0.2 909,817 - -0.0 909,854 - +0.7 909,854 - -0.3 909,863 + +0.3 909,863 + -0.3 910,097 + AMB_RS04320 0.40 -0.3 910,097 + AMB_RS04320 0.40 -0.6 910,097 + AMB_RS04320 0.40 -1.0 910,098 - AMB_RS04320 0.40 +0.3 910,379 + AMB_RS04320 0.79 -0.0 910,390 + AMB_RS04320 0.81 -1.4 910,391 - AMB_RS04320 0.81 -0.5 910,391 - AMB_RS04320 0.81 +2.0 910,391 - AMB_RS04320 0.81 -1.0 910,481 + +0.3 910,482 - -0.4 910,482 - -1.3 910,482 - -2.0 910,527 - +0.0 910,604 + AMB_RS04325 0.12 -1.3 910,605 - AMB_RS04325 0.12 -0.3 910,605 - AMB_RS04325 0.12 -4.3 910,676 + AMB_RS04325 0.24 -1.3 910,676 + AMB_RS04325 0.24 -2.3 910,676 + AMB_RS04325 0.24 -1.7 910,677 - AMB_RS04325 0.24 -0.8 910,677 - AMB_RS04325 0.24 -1.0 910,709 + AMB_RS04325 0.29 -2.0 910,710 - AMB_RS04325 0.29 +1.3 910,729 + AMB_RS04325 0.32 -1.5 910,729 + AMB_RS04325 0.32 -0.7
Or see this region's nucleotide sequence