Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03530

Experiment: 30_nonmag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS03525 and AMB_RS03530 are separated by 1 nucleotidesAMB_RS03530 and AMB_RS03535 are separated by 0 nucleotidesAMB_RS03535 and AMB_RS03540 are separated by 196 nucleotides AMB_RS03525: AMB_RS03525 - O-linked N-acetylglucosamine transferase, at 740,220 to 741,911 _RS03525 AMB_RS03530: AMB_RS03530 - hypothetical protein, at 741,913 to 742,935 _RS03530 AMB_RS03535: AMB_RS03535 - hypothetical protein, at 742,936 to 743,310 _RS03535 AMB_RS03540: AMB_RS03540 - hypothetical protein, at 743,507 to 744,361 _RS03540 Position (kb) 741 742 743Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 740.919 kb on + strand, within AMB_RS03525at 740.919 kb on + strand, within AMB_RS03525at 740.920 kb on - strand, within AMB_RS03525at 740.920 kb on - strand, within AMB_RS03525at 740.920 kb on - strand, within AMB_RS03525at 740.920 kb on - strand, within AMB_RS03525at 740.920 kb on - strand, within AMB_RS03525at 740.920 kb on - strand, within AMB_RS03525at 741.214 kb on - strand, within AMB_RS03525at 741.214 kb on - strand, within AMB_RS03525at 741.214 kb on - strand, within AMB_RS03525at 741.214 kb on - strand, within AMB_RS03525at 741.486 kb on + strand, within AMB_RS03525at 741.486 kb on + strand, within AMB_RS03525at 741.486 kb on + strand, within AMB_RS03525at 741.486 kb on + strand, within AMB_RS03525at 741.486 kb on + strand, within AMB_RS03525at 741.487 kb on - strand, within AMB_RS03525at 741.487 kb on - strand, within AMB_RS03525at 741.487 kb on - strand, within AMB_RS03525at 741.487 kb on - strand, within AMB_RS03525at 741.487 kb on - strand, within AMB_RS03525at 741.487 kb on - strand, within AMB_RS03525at 741.590 kb on + strand, within AMB_RS03525at 741.590 kb on + strand, within AMB_RS03525at 741.590 kb on + strand, within AMB_RS03525at 741.590 kb on + strand, within AMB_RS03525at 741.591 kb on - strand, within AMB_RS03525at 741.591 kb on - strand, within AMB_RS03525at 741.591 kb on - strand, within AMB_RS03525at 741.744 kb on + strandat 741.744 kb on + strandat 741.744 kb on + strandat 741.744 kb on + strandat 741.745 kb on - strandat 741.982 kb on + strandat 741.982 kb on + strandat 742.363 kb on + strand, within AMB_RS03530at 742.363 kb on + strand, within AMB_RS03530at 742.363 kb on + strand, within AMB_RS03530at 742.363 kb on + strand, within AMB_RS03530at 742.363 kb on + strand, within AMB_RS03530at 742.364 kb on - strand, within AMB_RS03530at 742.364 kb on - strand, within AMB_RS03530at 742.364 kb on - strand, within AMB_RS03530at 742.364 kb on - strand, within AMB_RS03530at 742.364 kb on - strand, within AMB_RS03530at 742.364 kb on - strand, within AMB_RS03530at 742.408 kb on + strand, within AMB_RS03530at 742.408 kb on + strand, within AMB_RS03530at 742.462 kb on + strand, within AMB_RS03530at 742.513 kb on + strand, within AMB_RS03530at 742.513 kb on + strand, within AMB_RS03530at 742.514 kb on - strand, within AMB_RS03530at 742.514 kb on - strand, within AMB_RS03530at 742.514 kb on - strand, within AMB_RS03530at 742.546 kb on + strand, within AMB_RS03530at 743.311 kb on - strandat 743.311 kb on - strandat 743.345 kb on + strandat 743.346 kb on - strandat 743.433 kb on + strandat 743.434 kb on - strandat 743.458 kb on + strandat 743.458 kb on + strandat 743.459 kb on - strandat 743.459 kb on - strandat 743.459 kb on - strandat 743.503 kb on + strandat 743.503 kb on + strandat 743.503 kb on + strandat 743.531 kb on + strandat 743.532 kb on - strandat 743.624 kb on + strand, within AMB_RS03540at 743.624 kb on + strand, within AMB_RS03540at 743.636 kb on + strand, within AMB_RS03540at 743.636 kb on + strand, within AMB_RS03540at 743.637 kb on - strand, within AMB_RS03540at 743.637 kb on - strand, within AMB_RS03540at 743.637 kb on - strand, within AMB_RS03540at 743.637 kb on - strand, within AMB_RS03540at 743.637 kb on - strand, within AMB_RS03540at 743.637 kb on - strand, within AMB_RS03540at 743.637 kb on - strand, within AMB_RS03540at 743.637 kb on - strand, within AMB_RS03540at 743.638 kb on + strand, within AMB_RS03540at 743.638 kb on + strand, within AMB_RS03540at 743.638 kb on + strand, within AMB_RS03540at 743.638 kb on + strand, within AMB_RS03540at 743.639 kb on - strand, within AMB_RS03540at 743.639 kb on - strand, within AMB_RS03540at 743.639 kb on - strand, within AMB_RS03540at 743.639 kb on - strand, within AMB_RS03540at 743.639 kb on - strand, within AMB_RS03540at 743.639 kb on - strand, within AMB_RS03540at 743.681 kb on + strand, within AMB_RS03540at 743.682 kb on - strand, within AMB_RS03540at 743.686 kb on + strand, within AMB_RS03540at 743.686 kb on + strand, within AMB_RS03540at 743.686 kb on + strand, within AMB_RS03540at 743.686 kb on + strand, within AMB_RS03540at 743.686 kb on + strand, within AMB_RS03540at 743.686 kb on + strand, within AMB_RS03540at 743.686 kb on + strand, within AMB_RS03540at 743.687 kb on - strand, within AMB_RS03540at 743.687 kb on - strand, within AMB_RS03540at 743.687 kb on - strand, within AMB_RS03540at 743.687 kb on - strand, within AMB_RS03540at 743.687 kb on - strand, within AMB_RS03540at 743.687 kb on - strand, within AMB_RS03540at 743.687 kb on - strand, within AMB_RS03540at 743.878 kb on + strand, within AMB_RS03540at 743.878 kb on + strand, within AMB_RS03540at 743.879 kb on - strand, within AMB_RS03540at 743.879 kb on - strand, within AMB_RS03540at 743.879 kb on - strand, within AMB_RS03540at 743.879 kb on - strand, within AMB_RS03540at 743.879 kb on - strand, within AMB_RS03540at 743.879 kb on - strand, within AMB_RS03540at 743.902 kb on + strand, within AMB_RS03540at 743.902 kb on + strand, within AMB_RS03540at 743.902 kb on + strand, within AMB_RS03540at 743.902 kb on + strand, within AMB_RS03540at 743.903 kb on - strand, within AMB_RS03540at 743.903 kb on - strand, within AMB_RS03540

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_3
remove
740,919 + AMB_RS03525 0.41 +0.5
740,919 + AMB_RS03525 0.41 +0.6
740,920 - AMB_RS03525 0.41 -0.1
740,920 - AMB_RS03525 0.41 -0.2
740,920 - AMB_RS03525 0.41 -0.4
740,920 - AMB_RS03525 0.41 -0.4
740,920 - AMB_RS03525 0.41 +0.4
740,920 - AMB_RS03525 0.41 +0.7
741,214 - AMB_RS03525 0.59 +1.3
741,214 - AMB_RS03525 0.59 +0.5
741,214 - AMB_RS03525 0.59 -0.9
741,214 - AMB_RS03525 0.59 +0.2
741,486 + AMB_RS03525 0.75 -0.7
741,486 + AMB_RS03525 0.75 +1.3
741,486 + AMB_RS03525 0.75 +0.1
741,486 + AMB_RS03525 0.75 -0.3
741,486 + AMB_RS03525 0.75 -0.7
741,487 - AMB_RS03525 0.75 -1.4
741,487 - AMB_RS03525 0.75 -2.9
741,487 - AMB_RS03525 0.75 +0.9
741,487 - AMB_RS03525 0.75 +2.0
741,487 - AMB_RS03525 0.75 +0.1
741,487 - AMB_RS03525 0.75 +0.1
741,590 + AMB_RS03525 0.81 -0.7
741,590 + AMB_RS03525 0.81 -0.0
741,590 + AMB_RS03525 0.81 -0.5
741,590 + AMB_RS03525 0.81 -0.2
741,591 - AMB_RS03525 0.81 -1.0
741,591 - AMB_RS03525 0.81 -4.0
741,591 - AMB_RS03525 0.81 -1.7
741,744 + -0.4
741,744 + -1.4
741,744 + -1.3
741,744 + -0.1
741,745 - +0.5
741,982 + +0.8
741,982 + +0.2
742,363 + AMB_RS03530 0.44 +0.1
742,363 + AMB_RS03530 0.44 +0.8
742,363 + AMB_RS03530 0.44 +0.4
742,363 + AMB_RS03530 0.44 +0.6
742,363 + AMB_RS03530 0.44 +1.3
742,364 - AMB_RS03530 0.44 +0.9
742,364 - AMB_RS03530 0.44 +0.3
742,364 - AMB_RS03530 0.44 -0.6
742,364 - AMB_RS03530 0.44 +0.8
742,364 - AMB_RS03530 0.44 +0.1
742,364 - AMB_RS03530 0.44 +0.9
742,408 + AMB_RS03530 0.48 +0.1
742,408 + AMB_RS03530 0.48 -0.4
742,462 + AMB_RS03530 0.54 -0.1
742,513 + AMB_RS03530 0.59 -2.7
742,513 + AMB_RS03530 0.59 -0.3
742,514 - AMB_RS03530 0.59 -3.0
742,514 - AMB_RS03530 0.59 +0.5
742,514 - AMB_RS03530 0.59 +0.1
742,546 + AMB_RS03530 0.62 -0.4
743,311 - -0.4
743,311 - -0.8
743,345 + +0.8
743,346 - -0.9
743,433 + -0.3
743,434 - -2.3
743,458 + +2.6
743,458 + -0.3
743,459 - -0.1
743,459 - -0.7
743,459 - +0.2
743,503 + -0.1
743,503 + -2.0
743,503 + -0.4
743,531 + -3.5
743,532 - -0.2
743,624 + AMB_RS03540 0.14 -0.7
743,624 + AMB_RS03540 0.14 -0.8
743,636 + AMB_RS03540 0.15 +0.8
743,636 + AMB_RS03540 0.15 -0.4
743,637 - AMB_RS03540 0.15 -0.6
743,637 - AMB_RS03540 0.15 +1.5
743,637 - AMB_RS03540 0.15 -0.2
743,637 - AMB_RS03540 0.15 -3.6
743,637 - AMB_RS03540 0.15 -0.5
743,637 - AMB_RS03540 0.15 -0.4
743,637 - AMB_RS03540 0.15 +0.5
743,637 - AMB_RS03540 0.15 -0.5
743,638 + AMB_RS03540 0.15 -0.7
743,638 + AMB_RS03540 0.15 -0.2
743,638 + AMB_RS03540 0.15 -2.0
743,638 + AMB_RS03540 0.15 +0.2
743,639 - AMB_RS03540 0.15 +0.3
743,639 - AMB_RS03540 0.15 +0.1
743,639 - AMB_RS03540 0.15 -0.2
743,639 - AMB_RS03540 0.15 -0.6
743,639 - AMB_RS03540 0.15 -0.6
743,639 - AMB_RS03540 0.15 +0.5
743,681 + AMB_RS03540 0.20 -0.5
743,682 - AMB_RS03540 0.20 +0.0
743,686 + AMB_RS03540 0.21 -0.2
743,686 + AMB_RS03540 0.21 -0.3
743,686 + AMB_RS03540 0.21 +2.6
743,686 + AMB_RS03540 0.21 -1.7
743,686 + AMB_RS03540 0.21 +0.0
743,686 + AMB_RS03540 0.21 -2.0
743,686 + AMB_RS03540 0.21 -0.0
743,687 - AMB_RS03540 0.21 -1.2
743,687 - AMB_RS03540 0.21 +0.5
743,687 - AMB_RS03540 0.21 +0.3
743,687 - AMB_RS03540 0.21 -0.3
743,687 - AMB_RS03540 0.21 -1.7
743,687 - AMB_RS03540 0.21 -2.5
743,687 - AMB_RS03540 0.21 +0.3
743,878 + AMB_RS03540 0.43 -0.3
743,878 + AMB_RS03540 0.43 -0.9
743,879 - AMB_RS03540 0.44 -1.3
743,879 - AMB_RS03540 0.44 +0.0
743,879 - AMB_RS03540 0.44 +0.2
743,879 - AMB_RS03540 0.44 +0.1
743,879 - AMB_RS03540 0.44 -1.9
743,879 - AMB_RS03540 0.44 -1.1
743,902 + AMB_RS03540 0.46 -0.6
743,902 + AMB_RS03540 0.46 -0.6
743,902 + AMB_RS03540 0.46 -1.6
743,902 + AMB_RS03540 0.46 -1.3
743,903 - AMB_RS03540 0.46 -0.5
743,903 - AMB_RS03540 0.46 -0.7

Or see this region's nucleotide sequence