Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03355

Experiment: 30_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03350 and AMB_RS23900 are separated by 125 nucleotidesAMB_RS23900 and AMB_RS03355 are separated by 18 nucleotidesAMB_RS03355 and AMB_RS03360 are separated by 24 nucleotidesAMB_RS03360 and AMB_RS03365 are separated by 356 nucleotides AMB_RS03350: AMB_RS03350 - DNA-binding response regulator, at 701,923 to 702,675 _RS03350 AMB_RS23900: AMB_RS23900 - PilZ domain-containing protein, at 702,801 to 703,151 _RS23900 AMB_RS03355: AMB_RS03355 - two-component system response regulator, at 703,170 to 704,333 _RS03355 AMB_RS03360: AMB_RS03360 - hypothetical protein, at 704,358 to 704,660 _RS03360 AMB_RS03365: AMB_RS03365 - site-specific integrase, at 705,017 to 706,354 _RS03365 Position (kb) 703 704 705Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 702.213 kb on + strand, within AMB_RS03350at 702.213 kb on + strand, within AMB_RS03350at 702.213 kb on + strand, within AMB_RS03350at 702.213 kb on + strand, within AMB_RS03350at 702.214 kb on - strand, within AMB_RS03350at 702.214 kb on - strand, within AMB_RS03350at 702.214 kb on - strand, within AMB_RS03350at 702.214 kb on - strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.216 kb on - strand, within AMB_RS03350at 702.216 kb on - strand, within AMB_RS03350at 702.216 kb on - strand, within AMB_RS03350at 702.216 kb on - strand, within AMB_RS03350at 702.328 kb on + strand, within AMB_RS03350at 702.328 kb on + strand, within AMB_RS03350at 702.332 kb on + strand, within AMB_RS03350at 702.332 kb on + strand, within AMB_RS03350at 702.333 kb on - strand, within AMB_RS03350at 702.566 kb on + strand, within AMB_RS03350at 702.566 kb on + strand, within AMB_RS03350at 702.567 kb on - strand, within AMB_RS03350at 702.567 kb on - strand, within AMB_RS03350at 702.755 kb on - strandat 702.872 kb on + strand, within AMB_RS23900at 702.875 kb on - strand, within AMB_RS23900at 703.037 kb on + strand, within AMB_RS23900at 703.038 kb on - strand, within AMB_RS23900at 703.073 kb on + strand, within AMB_RS23900at 703.073 kb on + strand, within AMB_RS23900at 703.073 kb on + strand, within AMB_RS23900at 703.073 kb on + strand, within AMB_RS23900at 703.074 kb on - strand, within AMB_RS23900at 703.074 kb on - strand, within AMB_RS23900at 703.303 kb on + strand, within AMB_RS03355at 703.303 kb on + strand, within AMB_RS03355at 703.303 kb on + strand, within AMB_RS03355at 703.303 kb on + strand, within AMB_RS03355at 703.304 kb on - strand, within AMB_RS03355at 703.304 kb on - strand, within AMB_RS03355at 703.304 kb on - strand, within AMB_RS03355at 703.304 kb on - strand, within AMB_RS03355at 703.397 kb on - strand, within AMB_RS03355at 703.475 kb on + strand, within AMB_RS03355at 703.475 kb on + strand, within AMB_RS03355at 703.475 kb on + strand, within AMB_RS03355at 703.476 kb on - strand, within AMB_RS03355at 703.476 kb on - strand, within AMB_RS03355at 703.476 kb on - strand, within AMB_RS03355at 703.476 kb on - strand, within AMB_RS03355at 703.476 kb on - strand, within AMB_RS03355at 703.477 kb on + strand, within AMB_RS03355at 703.477 kb on + strand, within AMB_RS03355at 703.477 kb on + strand, within AMB_RS03355at 703.477 kb on + strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.478 kb on - strand, within AMB_RS03355at 703.651 kb on - strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.687 kb on + strand, within AMB_RS03355at 703.688 kb on - strand, within AMB_RS03355at 703.688 kb on - strand, within AMB_RS03355at 703.688 kb on - strand, within AMB_RS03355at 703.688 kb on - strand, within AMB_RS03355at 703.693 kb on + strand, within AMB_RS03355at 703.693 kb on + strand, within AMB_RS03355at 703.693 kb on + strand, within AMB_RS03355at 703.694 kb on - strand, within AMB_RS03355at 703.694 kb on - strand, within AMB_RS03355at 703.789 kb on + strand, within AMB_RS03355at 703.789 kb on + strand, within AMB_RS03355at 703.789 kb on + strand, within AMB_RS03355at 703.790 kb on - strand, within AMB_RS03355at 703.870 kb on + strand, within AMB_RS03355at 703.870 kb on + strand, within AMB_RS03355at 703.870 kb on + strand, within AMB_RS03355at 703.871 kb on - strand, within AMB_RS03355at 703.871 kb on - strand, within AMB_RS03355at 703.871 kb on - strand, within AMB_RS03355at 703.899 kb on + strand, within AMB_RS03355at 703.962 kb on + strand, within AMB_RS03355at 703.962 kb on + strand, within AMB_RS03355at 703.963 kb on - strand, within AMB_RS03355at 703.963 kb on - strand, within AMB_RS03355at 703.963 kb on - strand, within AMB_RS03355at 704.075 kb on + strand, within AMB_RS03355at 704.075 kb on + strand, within AMB_RS03355at 704.075 kb on + strand, within AMB_RS03355at 704.075 kb on + strand, within AMB_RS03355at 704.075 kb on + strand, within AMB_RS03355at 704.076 kb on - strand, within AMB_RS03355at 704.192 kb on - strand, within AMB_RS03355at 704.326 kb on + strandat 704.326 kb on + strandat 704.326 kb on + strandat 704.326 kb on + strandat 704.326 kb on + strandat 704.326 kb on + strandat 704.326 kb on + strandat 704.327 kb on - strandat 704.327 kb on - strandat 704.327 kb on - strandat 704.327 kb on - strandat 704.327 kb on - strandat 704.327 kb on - strandat 704.420 kb on + strand, within AMB_RS03360at 704.420 kb on + strand, within AMB_RS03360at 704.420 kb on + strand, within AMB_RS03360at 704.420 kb on + strand, within AMB_RS03360at 704.420 kb on + strand, within AMB_RS03360at 704.421 kb on - strand, within AMB_RS03360at 704.421 kb on - strand, within AMB_RS03360at 704.444 kb on + strand, within AMB_RS03360at 704.500 kb on + strand, within AMB_RS03360at 704.501 kb on - strand, within AMB_RS03360at 704.501 kb on - strand, within AMB_RS03360at 704.501 kb on - strand, within AMB_RS03360at 704.506 kb on + strand, within AMB_RS03360at 704.506 kb on + strand, within AMB_RS03360at 704.506 kb on + strand, within AMB_RS03360at 704.506 kb on + strand, within AMB_RS03360at 704.507 kb on - strand, within AMB_RS03360at 704.507 kb on - strand, within AMB_RS03360at 704.600 kb on + strand, within AMB_RS03360at 704.600 kb on + strand, within AMB_RS03360at 704.601 kb on - strand, within AMB_RS03360at 704.650 kb on + strandat 704.650 kb on + strandat 704.650 kb on + strandat 704.650 kb on + strandat 704.650 kb on + strandat 704.650 kb on + strandat 704.650 kb on + strandat 704.650 kb on + strandat 704.651 kb on - strandat 704.651 kb on - strandat 704.651 kb on - strandat 704.651 kb on - strandat 704.651 kb on - strandat 704.714 kb on + strandat 704.715 kb on - strandat 704.718 kb on + strandat 704.937 kb on + strandat 704.937 kb on + strandat 704.938 kb on - strandat 705.001 kb on + strandat 705.061 kb on - strandat 705.061 kb on - strandat 705.091 kb on + strandat 705.091 kb on + strandat 705.111 kb on + strandat 705.121 kb on + strandat 705.121 kb on + strandat 705.122 kb on - strandat 705.154 kb on + strand, within AMB_RS03365at 705.155 kb on - strand, within AMB_RS03365at 705.155 kb on - strand, within AMB_RS03365at 705.312 kb on - strand, within AMB_RS03365at 705.322 kb on - strand, within AMB_RS03365

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_3
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702,213 + AMB_RS03350 0.39 -0.6
702,213 + AMB_RS03350 0.39 +0.2
702,213 + AMB_RS03350 0.39 +0.3
702,213 + AMB_RS03350 0.39 +0.4
702,214 - AMB_RS03350 0.39 -0.4
702,214 - AMB_RS03350 0.39 +0.1
702,214 - AMB_RS03350 0.39 -1.8
702,214 - AMB_RS03350 0.39 +0.5
702,215 + AMB_RS03350 0.39 -0.7
702,215 + AMB_RS03350 0.39 -0.0
702,215 + AMB_RS03350 0.39 +0.4
702,215 + AMB_RS03350 0.39 -1.0
702,215 + AMB_RS03350 0.39 -0.4
702,215 + AMB_RS03350 0.39 -1.5
702,215 + AMB_RS03350 0.39 +0.0
702,215 + AMB_RS03350 0.39 -0.3
702,215 + AMB_RS03350 0.39 +0.6
702,215 + AMB_RS03350 0.39 -1.3
702,215 + AMB_RS03350 0.39 -0.8
702,215 + AMB_RS03350 0.39 -0.3
702,215 + AMB_RS03350 0.39 +0.3
702,215 + AMB_RS03350 0.39 -0.2
702,215 + AMB_RS03350 0.39 +0.7
702,216 - AMB_RS03350 0.39 -0.7
702,216 - AMB_RS03350 0.39 +0.6
702,216 - AMB_RS03350 0.39 -0.1
702,216 - AMB_RS03350 0.39 -0.1
702,328 + AMB_RS03350 0.54 -2.4
702,328 + AMB_RS03350 0.54 -2.5
702,332 + AMB_RS03350 0.54 -0.2
702,332 + AMB_RS03350 0.54 -0.3
702,333 - AMB_RS03350 0.54 -0.1
702,566 + AMB_RS03350 0.85 +0.0
702,566 + AMB_RS03350 0.85 +0.6
702,567 - AMB_RS03350 0.86 -0.3
702,567 - AMB_RS03350 0.86 -0.3
702,755 - -0.1
702,872 + AMB_RS23900 0.20 -0.7
702,875 - AMB_RS23900 0.21 -0.3
703,037 + AMB_RS23900 0.67 +0.6
703,038 - AMB_RS23900 0.68 -1.6
703,073 + AMB_RS23900 0.77 +0.3
703,073 + AMB_RS23900 0.77 -0.3
703,073 + AMB_RS23900 0.77 -0.3
703,073 + AMB_RS23900 0.77 -0.9
703,074 - AMB_RS23900 0.78 -1.4
703,074 - AMB_RS23900 0.78 -0.4
703,303 + AMB_RS03355 0.11 -0.8
703,303 + AMB_RS03355 0.11 +0.0
703,303 + AMB_RS03355 0.11 -0.2
703,303 + AMB_RS03355 0.11 +0.1
703,304 - AMB_RS03355 0.12 -2.9
703,304 - AMB_RS03355 0.12 -1.6
703,304 - AMB_RS03355 0.12 +0.3
703,304 - AMB_RS03355 0.12 -0.3
703,397 - AMB_RS03355 0.20 -0.2
703,475 + AMB_RS03355 0.26 +0.3
703,475 + AMB_RS03355 0.26 -0.0
703,475 + AMB_RS03355 0.26 -1.5
703,476 - AMB_RS03355 0.26 -0.9
703,476 - AMB_RS03355 0.26 -0.8
703,476 - AMB_RS03355 0.26 -0.4
703,476 - AMB_RS03355 0.26 +1.0
703,476 - AMB_RS03355 0.26 +0.1
703,477 + AMB_RS03355 0.26 +0.2
703,477 + AMB_RS03355 0.26 -0.3
703,477 + AMB_RS03355 0.26 -0.4
703,477 + AMB_RS03355 0.26 -0.5
703,478 - AMB_RS03355 0.26 +0.1
703,478 - AMB_RS03355 0.26 -1.2
703,478 - AMB_RS03355 0.26 -1.8
703,478 - AMB_RS03355 0.26 -2.2
703,478 - AMB_RS03355 0.26 -0.7
703,478 - AMB_RS03355 0.26 -0.2
703,651 - AMB_RS03355 0.41 -3.0
703,687 + AMB_RS03355 0.44 -0.8
703,687 + AMB_RS03355 0.44 +0.1
703,687 + AMB_RS03355 0.44 -0.3
703,687 + AMB_RS03355 0.44 -0.2
703,687 + AMB_RS03355 0.44 -2.9
703,687 + AMB_RS03355 0.44 +0.3
703,687 + AMB_RS03355 0.44 +0.5
703,687 + AMB_RS03355 0.44 -0.4
703,687 + AMB_RS03355 0.44 -0.8
703,688 - AMB_RS03355 0.45 -0.7
703,688 - AMB_RS03355 0.45 +1.3
703,688 - AMB_RS03355 0.45 -0.0
703,688 - AMB_RS03355 0.45 +0.7
703,693 + AMB_RS03355 0.45 -0.1
703,693 + AMB_RS03355 0.45 +0.6
703,693 + AMB_RS03355 0.45 +0.4
703,694 - AMB_RS03355 0.45 +0.2
703,694 - AMB_RS03355 0.45 +0.1
703,789 + AMB_RS03355 0.53 -0.4
703,789 + AMB_RS03355 0.53 -0.4
703,789 + AMB_RS03355 0.53 -0.5
703,790 - AMB_RS03355 0.53 -1.6
703,870 + AMB_RS03355 0.60 -0.2
703,870 + AMB_RS03355 0.60 -0.1
703,870 + AMB_RS03355 0.60 +0.5
703,871 - AMB_RS03355 0.60 -0.3
703,871 - AMB_RS03355 0.60 +2.2
703,871 - AMB_RS03355 0.60 -0.9
703,899 + AMB_RS03355 0.63 +0.9
703,962 + AMB_RS03355 0.68 -0.2
703,962 + AMB_RS03355 0.68 +0.3
703,963 - AMB_RS03355 0.68 -0.1
703,963 - AMB_RS03355 0.68 -0.8
703,963 - AMB_RS03355 0.68 -1.3
704,075 + AMB_RS03355 0.78 -0.7
704,075 + AMB_RS03355 0.78 -1.1
704,075 + AMB_RS03355 0.78 -0.0
704,075 + AMB_RS03355 0.78 -0.7
704,075 + AMB_RS03355 0.78 -0.4
704,076 - AMB_RS03355 0.78 -0.1
704,192 - AMB_RS03355 0.88 +0.0
704,326 + +0.4
704,326 + -0.1
704,326 + +0.8
704,326 + -1.2
704,326 + -0.2
704,326 + -0.3
704,326 + +0.4
704,327 - -1.0
704,327 - +0.1
704,327 - +0.8
704,327 - -0.1
704,327 - +0.5
704,327 - +1.4
704,420 + AMB_RS03360 0.20 +0.6
704,420 + AMB_RS03360 0.20 -1.3
704,420 + AMB_RS03360 0.20 +0.3
704,420 + AMB_RS03360 0.20 -3.8
704,420 + AMB_RS03360 0.20 -0.6
704,421 - AMB_RS03360 0.21 -0.4
704,421 - AMB_RS03360 0.21 +2.5
704,444 + AMB_RS03360 0.28 -1.7
704,500 + AMB_RS03360 0.47 +0.3
704,501 - AMB_RS03360 0.47 -1.3
704,501 - AMB_RS03360 0.47 -0.4
704,501 - AMB_RS03360 0.47 -0.5
704,506 + AMB_RS03360 0.49 -0.2
704,506 + AMB_RS03360 0.49 -0.3
704,506 + AMB_RS03360 0.49 +0.5
704,506 + AMB_RS03360 0.49 +0.0
704,507 - AMB_RS03360 0.49 -1.2
704,507 - AMB_RS03360 0.49 -0.5
704,600 + AMB_RS03360 0.80 -0.4
704,600 + AMB_RS03360 0.80 -0.2
704,601 - AMB_RS03360 0.80 -0.9
704,650 + -1.9
704,650 + -0.8
704,650 + -0.9
704,650 + -2.5
704,650 + -0.1
704,650 + -0.1
704,650 + -0.5
704,650 + +0.1
704,651 - -0.1
704,651 - -0.2
704,651 - -0.3
704,651 - +0.9
704,651 - -1.6
704,714 + -0.3
704,715 - +0.9
704,718 + -0.9
704,937 + +2.1
704,937 + +1.9
704,938 - -0.8
705,001 + -0.1
705,061 - +0.3
705,061 - +0.6
705,091 + -0.5
705,091 + -1.0
705,111 + +2.1
705,121 + -1.7
705,121 + -0.3
705,122 - +0.7
705,154 + AMB_RS03365 0.10 -2.4
705,155 - AMB_RS03365 0.10 -0.6
705,155 - AMB_RS03365 0.10 -0.6
705,312 - AMB_RS03365 0.22 -0.2
705,322 - AMB_RS03365 0.23 -0.2

Or see this region's nucleotide sequence