Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03345

Experiment: 30_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03335 and AMB_RS03340 overlap by 7 nucleotidesAMB_RS03340 and AMB_RS03345 are separated by 235 nucleotidesAMB_RS03345 and AMB_RS03350 overlap by 8 nucleotidesAMB_RS03350 and AMB_RS23900 are separated by 125 nucleotides AMB_RS03335: AMB_RS03335 - hypothetical protein, at 696,756 to 697,358 _RS03335 AMB_RS03340: AMB_RS03340 - transposase, at 697,352 to 697,621 _RS03340 AMB_RS03345: AMB_RS03345 - hypothetical protein, at 697,857 to 701,930 _RS03345 AMB_RS03350: AMB_RS03350 - DNA-binding response regulator, at 701,923 to 702,675 _RS03350 AMB_RS23900: AMB_RS23900 - PilZ domain-containing protein, at 702,801 to 703,151 _RS23900 Position (kb) 697 698 699 700 701 702Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 697.700 kb on + strandat 697.701 kb on - strandat 697.805 kb on - strandat 697.822 kb on + strandat 697.823 kb on - strandat 697.873 kb on + strandat 697.873 kb on + strandat 697.874 kb on - strandat 698.066 kb on - strandat 698.066 kb on - strandat 698.066 kb on - strandat 698.111 kb on + strandat 698.111 kb on + strandat 698.112 kb on - strandat 698.112 kb on - strandat 698.183 kb on + strandat 698.211 kb on - strandat 698.283 kb on + strand, within AMB_RS03345at 698.284 kb on - strand, within AMB_RS03345at 698.284 kb on - strand, within AMB_RS03345at 698.624 kb on + strand, within AMB_RS03345at 698.624 kb on + strand, within AMB_RS03345at 698.755 kb on + strand, within AMB_RS03345at 698.756 kb on - strand, within AMB_RS03345at 698.756 kb on - strand, within AMB_RS03345at 698.769 kb on + strand, within AMB_RS03345at 698.770 kb on - strand, within AMB_RS03345at 698.770 kb on - strand, within AMB_RS03345at 698.784 kb on + strand, within AMB_RS03345at 698.933 kb on + strand, within AMB_RS03345at 698.933 kb on + strand, within AMB_RS03345at 698.934 kb on - strand, within AMB_RS03345at 698.934 kb on - strand, within AMB_RS03345at 698.934 kb on - strand, within AMB_RS03345at 699.149 kb on + strand, within AMB_RS03345at 699.150 kb on - strand, within AMB_RS03345at 699.316 kb on + strand, within AMB_RS03345at 699.412 kb on + strand, within AMB_RS03345at 699.413 kb on - strand, within AMB_RS03345at 699.767 kb on + strand, within AMB_RS03345at 700.060 kb on - strand, within AMB_RS03345at 700.129 kb on - strand, within AMB_RS03345at 700.320 kb on + strand, within AMB_RS03345at 700.320 kb on + strand, within AMB_RS03345at 700.320 kb on + strand, within AMB_RS03345at 700.320 kb on + strand, within AMB_RS03345at 700.320 kb on + strand, within AMB_RS03345at 700.320 kb on + strand, within AMB_RS03345at 700.320 kb on + strand, within AMB_RS03345at 700.321 kb on - strand, within AMB_RS03345at 700.321 kb on - strand, within AMB_RS03345at 700.321 kb on - strand, within AMB_RS03345at 700.321 kb on - strand, within AMB_RS03345at 700.341 kb on + strand, within AMB_RS03345at 700.342 kb on - strand, within AMB_RS03345at 700.342 kb on - strand, within AMB_RS03345at 700.342 kb on - strand, within AMB_RS03345at 700.667 kb on + strand, within AMB_RS03345at 700.709 kb on + strand, within AMB_RS03345at 700.710 kb on - strand, within AMB_RS03345at 700.738 kb on + strand, within AMB_RS03345at 700.739 kb on - strand, within AMB_RS03345at 700.739 kb on - strand, within AMB_RS03345at 700.880 kb on + strand, within AMB_RS03345at 700.881 kb on - strand, within AMB_RS03345at 700.921 kb on + strand, within AMB_RS03345at 700.922 kb on - strand, within AMB_RS03345at 700.922 kb on - strand, within AMB_RS03345at 700.922 kb on - strand, within AMB_RS03345at 700.922 kb on - strand, within AMB_RS03345at 701.001 kb on - strand, within AMB_RS03345at 701.001 kb on - strand, within AMB_RS03345at 701.016 kb on + strand, within AMB_RS03345at 701.066 kb on + strand, within AMB_RS03345at 701.066 kb on + strand, within AMB_RS03345at 701.066 kb on + strand, within AMB_RS03345at 701.066 kb on + strand, within AMB_RS03345at 701.067 kb on - strand, within AMB_RS03345at 701.067 kb on - strand, within AMB_RS03345at 701.067 kb on - strand, within AMB_RS03345at 701.348 kb on + strand, within AMB_RS03345at 701.349 kb on - strand, within AMB_RS03345at 701.624 kb on + strandat 701.928 kb on + strandat 701.929 kb on - strandat 701.929 kb on - strandat 701.929 kb on - strandat 702.093 kb on - strand, within AMB_RS03350at 702.101 kb on + strand, within AMB_RS03350at 702.213 kb on + strand, within AMB_RS03350at 702.213 kb on + strand, within AMB_RS03350at 702.213 kb on + strand, within AMB_RS03350at 702.213 kb on + strand, within AMB_RS03350at 702.214 kb on - strand, within AMB_RS03350at 702.214 kb on - strand, within AMB_RS03350at 702.214 kb on - strand, within AMB_RS03350at 702.214 kb on - strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.215 kb on + strand, within AMB_RS03350at 702.216 kb on - strand, within AMB_RS03350at 702.216 kb on - strand, within AMB_RS03350at 702.216 kb on - strand, within AMB_RS03350at 702.216 kb on - strand, within AMB_RS03350at 702.328 kb on + strand, within AMB_RS03350at 702.328 kb on + strand, within AMB_RS03350at 702.332 kb on + strand, within AMB_RS03350at 702.332 kb on + strand, within AMB_RS03350at 702.333 kb on - strand, within AMB_RS03350at 702.566 kb on + strand, within AMB_RS03350at 702.566 kb on + strand, within AMB_RS03350at 702.567 kb on - strand, within AMB_RS03350at 702.567 kb on - strand, within AMB_RS03350at 702.755 kb on - strandat 702.872 kb on + strand, within AMB_RS23900at 702.875 kb on - strand, within AMB_RS23900

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_3
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697,700 + +0.2
697,701 - -0.0
697,805 - -1.4
697,822 + -0.2
697,823 - -3.1
697,873 + -1.1
697,873 + +0.5
697,874 - -0.3
698,066 - -0.2
698,066 - +0.0
698,066 - -1.7
698,111 + +0.9
698,111 + -0.6
698,112 - +0.6
698,112 - +1.9
698,183 + -0.4
698,211 - -0.8
698,283 + AMB_RS03345 0.10 -0.2
698,284 - AMB_RS03345 0.10 -0.6
698,284 - AMB_RS03345 0.10 +1.9
698,624 + AMB_RS03345 0.19 +0.9
698,624 + AMB_RS03345 0.19 +0.1
698,755 + AMB_RS03345 0.22 -0.5
698,756 - AMB_RS03345 0.22 -0.2
698,756 - AMB_RS03345 0.22 -0.6
698,769 + AMB_RS03345 0.22 -0.5
698,770 - AMB_RS03345 0.22 +0.6
698,770 - AMB_RS03345 0.22 -1.4
698,784 + AMB_RS03345 0.23 +0.0
698,933 + AMB_RS03345 0.26 +0.3
698,933 + AMB_RS03345 0.26 -0.1
698,934 - AMB_RS03345 0.26 +0.7
698,934 - AMB_RS03345 0.26 -0.9
698,934 - AMB_RS03345 0.26 -0.5
699,149 + AMB_RS03345 0.32 -3.0
699,150 - AMB_RS03345 0.32 +0.6
699,316 + AMB_RS03345 0.36 -0.9
699,412 + AMB_RS03345 0.38 -0.3
699,413 - AMB_RS03345 0.38 -0.3
699,767 + AMB_RS03345 0.47 -0.1
700,060 - AMB_RS03345 0.54 +0.1
700,129 - AMB_RS03345 0.56 +1.4
700,320 + AMB_RS03345 0.60 -1.3
700,320 + AMB_RS03345 0.60 -0.7
700,320 + AMB_RS03345 0.60 -0.5
700,320 + AMB_RS03345 0.60 -1.8
700,320 + AMB_RS03345 0.60 -0.1
700,320 + AMB_RS03345 0.60 -0.1
700,320 + AMB_RS03345 0.60 +0.0
700,321 - AMB_RS03345 0.60 -0.7
700,321 - AMB_RS03345 0.60 -1.2
700,321 - AMB_RS03345 0.60 -1.3
700,321 - AMB_RS03345 0.60 -1.8
700,341 + AMB_RS03345 0.61 -1.3
700,342 - AMB_RS03345 0.61 -0.4
700,342 - AMB_RS03345 0.61 -0.1
700,342 - AMB_RS03345 0.61 -0.4
700,667 + AMB_RS03345 0.69 -3.9
700,709 + AMB_RS03345 0.70 -0.0
700,710 - AMB_RS03345 0.70 -0.2
700,738 + AMB_RS03345 0.71 -0.6
700,739 - AMB_RS03345 0.71 -0.3
700,739 - AMB_RS03345 0.71 +1.0
700,880 + AMB_RS03345 0.74 -0.7
700,881 - AMB_RS03345 0.74 +0.7
700,921 + AMB_RS03345 0.75 -0.6
700,922 - AMB_RS03345 0.75 +0.0
700,922 - AMB_RS03345 0.75 +0.1
700,922 - AMB_RS03345 0.75 -0.3
700,922 - AMB_RS03345 0.75 +0.1
701,001 - AMB_RS03345 0.77 +1.0
701,001 - AMB_RS03345 0.77 +0.5
701,016 + AMB_RS03345 0.78 -0.9
701,066 + AMB_RS03345 0.79 -0.2
701,066 + AMB_RS03345 0.79 -0.2
701,066 + AMB_RS03345 0.79 +0.3
701,066 + AMB_RS03345 0.79 +0.7
701,067 - AMB_RS03345 0.79 -0.9
701,067 - AMB_RS03345 0.79 -1.0
701,067 - AMB_RS03345 0.79 -0.7
701,348 + AMB_RS03345 0.86 -1.1
701,349 - AMB_RS03345 0.86 +0.1
701,624 + -0.8
701,928 + -3.0
701,929 - -0.1
701,929 - -0.3
701,929 - -0.2
702,093 - AMB_RS03350 0.23 -0.7
702,101 + AMB_RS03350 0.24 -0.4
702,213 + AMB_RS03350 0.39 -0.6
702,213 + AMB_RS03350 0.39 +0.2
702,213 + AMB_RS03350 0.39 +0.3
702,213 + AMB_RS03350 0.39 +0.4
702,214 - AMB_RS03350 0.39 -0.4
702,214 - AMB_RS03350 0.39 +0.1
702,214 - AMB_RS03350 0.39 -1.8
702,214 - AMB_RS03350 0.39 +0.5
702,215 + AMB_RS03350 0.39 -0.7
702,215 + AMB_RS03350 0.39 -0.0
702,215 + AMB_RS03350 0.39 +0.4
702,215 + AMB_RS03350 0.39 -1.0
702,215 + AMB_RS03350 0.39 -0.4
702,215 + AMB_RS03350 0.39 -1.5
702,215 + AMB_RS03350 0.39 +0.0
702,215 + AMB_RS03350 0.39 -0.3
702,215 + AMB_RS03350 0.39 +0.6
702,215 + AMB_RS03350 0.39 -1.3
702,215 + AMB_RS03350 0.39 -0.8
702,215 + AMB_RS03350 0.39 -0.3
702,215 + AMB_RS03350 0.39 +0.3
702,215 + AMB_RS03350 0.39 -0.2
702,215 + AMB_RS03350 0.39 +0.7
702,216 - AMB_RS03350 0.39 -0.7
702,216 - AMB_RS03350 0.39 +0.6
702,216 - AMB_RS03350 0.39 -0.1
702,216 - AMB_RS03350 0.39 -0.1
702,328 + AMB_RS03350 0.54 -2.4
702,328 + AMB_RS03350 0.54 -2.5
702,332 + AMB_RS03350 0.54 -0.2
702,332 + AMB_RS03350 0.54 -0.3
702,333 - AMB_RS03350 0.54 -0.1
702,566 + AMB_RS03350 0.85 +0.0
702,566 + AMB_RS03350 0.85 +0.6
702,567 - AMB_RS03350 0.86 -0.3
702,567 - AMB_RS03350 0.86 -0.3
702,755 - -0.1
702,872 + AMB_RS23900 0.20 -0.7
702,875 - AMB_RS23900 0.21 -0.3

Or see this region's nucleotide sequence