Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02930

Experiment: 30_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02925 and AMB_RS02930 are separated by 7 nucleotidesAMB_RS02930 and AMB_RS02935 are separated by 76 nucleotides AMB_RS02925: AMB_RS02925 - spermidine/putrescine ABC transporter substrate-binding protein, at 612,326 to 613,369 _RS02925 AMB_RS02930: AMB_RS02930 - hypothetical protein, at 613,377 to 613,901 _RS02930 AMB_RS02935: AMB_RS02935 - PAS domain-containing sensor histidine kinase, at 613,978 to 616,245 _RS02935 Position (kb) 613 614Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 612.416 kb on + strandat 612.416 kb on + strandat 612.533 kb on + strand, within AMB_RS02925at 612.557 kb on + strand, within AMB_RS02925at 612.557 kb on + strand, within AMB_RS02925at 612.558 kb on - strand, within AMB_RS02925at 612.678 kb on - strand, within AMB_RS02925at 612.678 kb on - strand, within AMB_RS02925at 612.839 kb on + strand, within AMB_RS02925at 613.037 kb on + strand, within AMB_RS02925at 613.037 kb on + strand, within AMB_RS02925at 613.037 kb on + strand, within AMB_RS02925at 613.037 kb on + strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.044 kb on - strand, within AMB_RS02925at 613.181 kb on + strand, within AMB_RS02925at 613.181 kb on + strand, within AMB_RS02925at 613.181 kb on + strand, within AMB_RS02925at 613.182 kb on - strand, within AMB_RS02925at 613.182 kb on - strand, within AMB_RS02925at 613.182 kb on - strand, within AMB_RS02925at 613.182 kb on - strand, within AMB_RS02925at 613.539 kb on - strand, within AMB_RS02930at 613.539 kb on - strand, within AMB_RS02930at 613.609 kb on + strand, within AMB_RS02930at 613.609 kb on + strand, within AMB_RS02930at 613.610 kb on - strand, within AMB_RS02930at 613.610 kb on - strand, within AMB_RS02930at 613.610 kb on - strand, within AMB_RS02930at 613.610 kb on - strand, within AMB_RS02930at 613.639 kb on + strand, within AMB_RS02930at 613.640 kb on - strand, within AMB_RS02930at 613.640 kb on - strand, within AMB_RS02930at 613.640 kb on - strand, within AMB_RS02930at 613.640 kb on - strand, within AMB_RS02930at 613.729 kb on + strand, within AMB_RS02930at 613.729 kb on + strand, within AMB_RS02930at 613.730 kb on - strand, within AMB_RS02930at 613.852 kb on + strandat 613.852 kb on + strandat 613.853 kb on - strandat 613.853 kb on - strandat 613.853 kb on - strandat 613.853 kb on - strandat 613.884 kb on + strandat 613.884 kb on + strandat 613.885 kb on - strandat 613.885 kb on - strandat 613.885 kb on - strandat 613.885 kb on - strandat 613.922 kb on + strandat 613.922 kb on + strandat 614.557 kb on - strand, within AMB_RS02935at 614.567 kb on + strand, within AMB_RS02935at 614.609 kb on + strand, within AMB_RS02935at 614.609 kb on + strand, within AMB_RS02935at 614.609 kb on + strand, within AMB_RS02935at 614.609 kb on + strand, within AMB_RS02935at 614.609 kb on + strand, within AMB_RS02935at 614.609 kb on + strand, within AMB_RS02935at 614.609 kb on + strand, within AMB_RS02935at 614.610 kb on - strand, within AMB_RS02935at 614.610 kb on - strand, within AMB_RS02935at 614.610 kb on - strand, within AMB_RS02935at 614.610 kb on - strand, within AMB_RS02935at 614.610 kb on - strand, within AMB_RS02935at 614.610 kb on - strand, within AMB_RS02935at 614.760 kb on + strand, within AMB_RS02935at 614.761 kb on - strand, within AMB_RS02935at 614.783 kb on + strand, within AMB_RS02935at 614.783 kb on + strand, within AMB_RS02935at 614.783 kb on + strand, within AMB_RS02935at 614.783 kb on + strand, within AMB_RS02935at 614.783 kb on + strand, within AMB_RS02935at 614.784 kb on - strand, within AMB_RS02935at 614.784 kb on - strand, within AMB_RS02935at 614.858 kb on + strand, within AMB_RS02935at 614.858 kb on + strand, within AMB_RS02935at 614.859 kb on - strand, within AMB_RS02935at 614.859 kb on - strand, within AMB_RS02935

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_3
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612,416 + +0.0
612,416 + -1.2
612,533 + AMB_RS02925 0.20 -0.1
612,557 + AMB_RS02925 0.22 -0.3
612,557 + AMB_RS02925 0.22 +0.1
612,558 - AMB_RS02925 0.22 +0.0
612,678 - AMB_RS02925 0.34 -0.6
612,678 - AMB_RS02925 0.34 +0.3
612,839 + AMB_RS02925 0.49 -0.1
613,037 + AMB_RS02925 0.68 +0.7
613,037 + AMB_RS02925 0.68 +0.3
613,037 + AMB_RS02925 0.68 -0.7
613,037 + AMB_RS02925 0.68 -0.4
613,038 - AMB_RS02925 0.68 -0.2
613,038 - AMB_RS02925 0.68 -1.4
613,038 - AMB_RS02925 0.68 +0.0
613,038 - AMB_RS02925 0.68 -3.1
613,038 - AMB_RS02925 0.68 +0.2
613,038 - AMB_RS02925 0.68 -0.1
613,044 - AMB_RS02925 0.69 -0.3
613,181 + AMB_RS02925 0.82 -0.5
613,181 + AMB_RS02925 0.82 -0.1
613,181 + AMB_RS02925 0.82 -0.1
613,182 - AMB_RS02925 0.82 -1.1
613,182 - AMB_RS02925 0.82 -0.1
613,182 - AMB_RS02925 0.82 +0.7
613,182 - AMB_RS02925 0.82 +0.3
613,539 - AMB_RS02930 0.31 -0.2
613,539 - AMB_RS02930 0.31 +0.4
613,609 + AMB_RS02930 0.44 -1.2
613,609 + AMB_RS02930 0.44 -0.9
613,610 - AMB_RS02930 0.44 -1.3
613,610 - AMB_RS02930 0.44 +0.2
613,610 - AMB_RS02930 0.44 -0.2
613,610 - AMB_RS02930 0.44 +0.8
613,639 + AMB_RS02930 0.50 -0.8
613,640 - AMB_RS02930 0.50 -0.2
613,640 - AMB_RS02930 0.50 -3.8
613,640 - AMB_RS02930 0.50 +1.1
613,640 - AMB_RS02930 0.50 -0.2
613,729 + AMB_RS02930 0.67 +0.1
613,729 + AMB_RS02930 0.67 -1.3
613,730 - AMB_RS02930 0.67 -0.0
613,852 + -0.2
613,852 + -0.1
613,853 - -2.6
613,853 - -1.4
613,853 - -0.5
613,853 - -0.2
613,884 + -1.2
613,884 + -0.7
613,885 - +0.6
613,885 - -0.4
613,885 - +0.0
613,885 - -0.6
613,922 + -1.3
613,922 + -0.7
614,557 - AMB_RS02935 0.26 -0.0
614,567 + AMB_RS02935 0.26 -0.3
614,609 + AMB_RS02935 0.28 +0.2
614,609 + AMB_RS02935 0.28 -0.3
614,609 + AMB_RS02935 0.28 -1.0
614,609 + AMB_RS02935 0.28 -0.3
614,609 + AMB_RS02935 0.28 -0.3
614,609 + AMB_RS02935 0.28 -0.2
614,609 + AMB_RS02935 0.28 -1.3
614,610 - AMB_RS02935 0.28 +0.6
614,610 - AMB_RS02935 0.28 +0.8
614,610 - AMB_RS02935 0.28 +0.0
614,610 - AMB_RS02935 0.28 -0.1
614,610 - AMB_RS02935 0.28 -1.2
614,610 - AMB_RS02935 0.28 -0.1
614,760 + AMB_RS02935 0.34 -0.2
614,761 - AMB_RS02935 0.35 -0.5
614,783 + AMB_RS02935 0.35 -0.0
614,783 + AMB_RS02935 0.35 -1.0
614,783 + AMB_RS02935 0.35 -1.0
614,783 + AMB_RS02935 0.35 +0.8
614,783 + AMB_RS02935 0.35 -0.4
614,784 - AMB_RS02935 0.36 +0.3
614,784 - AMB_RS02935 0.36 +0.1
614,858 + AMB_RS02935 0.39 +2.0
614,858 + AMB_RS02935 0.39 -1.9
614,859 - AMB_RS02935 0.39 -0.1
614,859 - AMB_RS02935 0.39 +0.4

Or see this region's nucleotide sequence