Experiment: 30_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02865 and AMB_RS02870 are separated by 273 nucleotides AMB_RS02870 and AMB_RS02875 are separated by 57 nucleotides
AMB_RS02865: AMB_RS02865 - response regulator, at 600,116 to 601,165
_RS02865
AMB_RS02870: AMB_RS02870 - methyl-accepting chemotaxis protein, at 601,439 to 603,199
_RS02870
AMB_RS02875: AMB_RS02875 - pyridoxal phosphate-dependent aminotransferase, at 603,257 to 604,459
_RS02875
Position (kb) 601
602
603
604 Strain fitness (log2 ratio) -2
-1
0
1
2 at 600.654 kb on + strand, within AMB_RS02865 at 600.654 kb on + strand, within AMB_RS02865 at 600.654 kb on + strand, within AMB_RS02865 at 600.655 kb on - strand, within AMB_RS02865 at 600.655 kb on - strand, within AMB_RS02865 at 600.772 kb on - strand, within AMB_RS02865 at 600.781 kb on + strand, within AMB_RS02865 at 600.782 kb on - strand, within AMB_RS02865 at 600.822 kb on + strand, within AMB_RS02865 at 600.822 kb on + strand, within AMB_RS02865 at 600.823 kb on - strand, within AMB_RS02865 at 600.823 kb on - strand, within AMB_RS02865 at 601.115 kb on + strand at 601.115 kb on + strand at 601.116 kb on - strand at 601.116 kb on - strand at 601.241 kb on - strand at 601.349 kb on + strand at 601.369 kb on + strand at 601.775 kb on + strand, within AMB_RS02870 at 601.775 kb on + strand, within AMB_RS02870 at 601.775 kb on + strand, within AMB_RS02870 at 601.775 kb on + strand, within AMB_RS02870 at 601.776 kb on - strand, within AMB_RS02870 at 601.776 kb on - strand, within AMB_RS02870 at 601.776 kb on - strand, within AMB_RS02870 at 601.793 kb on + strand, within AMB_RS02870 at 601.794 kb on - strand, within AMB_RS02870 at 601.877 kb on + strand, within AMB_RS02870 at 601.877 kb on + strand, within AMB_RS02870 at 601.877 kb on + strand, within AMB_RS02870 at 601.877 kb on + strand, within AMB_RS02870 at 601.877 kb on + strand, within AMB_RS02870 at 601.877 kb on + strand, within AMB_RS02870 at 601.877 kb on + strand, within AMB_RS02870 at 601.877 kb on + strand, within AMB_RS02870 at 601.878 kb on - strand, within AMB_RS02870 at 601.878 kb on - strand, within AMB_RS02870 at 601.878 kb on - strand, within AMB_RS02870 at 601.878 kb on - strand, within AMB_RS02870 at 601.878 kb on - strand, within AMB_RS02870 at 601.878 kb on - strand, within AMB_RS02870 at 601.937 kb on + strand, within AMB_RS02870 at 601.937 kb on + strand, within AMB_RS02870 at 601.937 kb on + strand, within AMB_RS02870 at 601.937 kb on + strand, within AMB_RS02870 at 601.938 kb on - strand, within AMB_RS02870 at 601.938 kb on - strand, within AMB_RS02870 at 601.960 kb on + strand, within AMB_RS02870 at 601.985 kb on + strand, within AMB_RS02870 at 601.985 kb on + strand, within AMB_RS02870 at 601.986 kb on - strand, within AMB_RS02870 at 601.986 kb on - strand, within AMB_RS02870 at 601.986 kb on - strand, within AMB_RS02870 at 601.986 kb on - strand, within AMB_RS02870 at 601.986 kb on - strand, within AMB_RS02870 at 601.997 kb on + strand, within AMB_RS02870 at 601.997 kb on + strand, within AMB_RS02870 at 601.997 kb on + strand, within AMB_RS02870 at 601.997 kb on + strand, within AMB_RS02870 at 601.997 kb on + strand, within AMB_RS02870 at 601.997 kb on + strand, within AMB_RS02870 at 601.998 kb on - strand, within AMB_RS02870 at 601.998 kb on - strand, within AMB_RS02870 at 601.998 kb on - strand, within AMB_RS02870 at 602.033 kb on + strand, within AMB_RS02870 at 602.033 kb on + strand, within AMB_RS02870 at 602.033 kb on + strand, within AMB_RS02870 at 602.033 kb on + strand, within AMB_RS02870 at 602.034 kb on - strand, within AMB_RS02870 at 602.058 kb on - strand, within AMB_RS02870 at 602.058 kb on - strand, within AMB_RS02870 at 603.052 kb on + strand at 603.052 kb on + strand at 603.053 kb on - strand at 603.258 kb on + strand at 603.258 kb on + strand at 603.259 kb on - strand at 603.259 kb on - strand at 603.259 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_3 remove 600,654 + AMB_RS02865 0.51 -2.5 600,654 + AMB_RS02865 0.51 +0.2 600,654 + AMB_RS02865 0.51 -1.1 600,655 - AMB_RS02865 0.51 +0.6 600,655 - AMB_RS02865 0.51 -1.2 600,772 - AMB_RS02865 0.62 -0.1 600,781 + AMB_RS02865 0.63 -0.1 600,782 - AMB_RS02865 0.63 -0.1 600,822 + AMB_RS02865 0.67 -0.6 600,822 + AMB_RS02865 0.67 -0.2 600,823 - AMB_RS02865 0.67 +0.8 600,823 - AMB_RS02865 0.67 +1.8 601,115 + +0.2 601,115 + +1.0 601,116 - -0.7 601,116 - +0.4 601,241 - -0.0 601,349 + -1.9 601,369 + -2.3 601,775 + AMB_RS02870 0.19 -0.2 601,775 + AMB_RS02870 0.19 -0.0 601,775 + AMB_RS02870 0.19 -0.0 601,775 + AMB_RS02870 0.19 -2.3 601,776 - AMB_RS02870 0.19 -1.3 601,776 - AMB_RS02870 0.19 -0.7 601,776 - AMB_RS02870 0.19 -0.5 601,793 + AMB_RS02870 0.20 +0.6 601,794 - AMB_RS02870 0.20 -0.3 601,877 + AMB_RS02870 0.25 -1.3 601,877 + AMB_RS02870 0.25 +0.5 601,877 + AMB_RS02870 0.25 -0.0 601,877 + AMB_RS02870 0.25 -0.4 601,877 + AMB_RS02870 0.25 -0.7 601,877 + AMB_RS02870 0.25 +0.4 601,877 + AMB_RS02870 0.25 -1.1 601,877 + AMB_RS02870 0.25 -2.2 601,878 - AMB_RS02870 0.25 +0.1 601,878 - AMB_RS02870 0.25 +0.9 601,878 - AMB_RS02870 0.25 -0.5 601,878 - AMB_RS02870 0.25 +0.2 601,878 - AMB_RS02870 0.25 -0.7 601,878 - AMB_RS02870 0.25 +0.2 601,937 + AMB_RS02870 0.28 +0.6 601,937 + AMB_RS02870 0.28 +0.2 601,937 + AMB_RS02870 0.28 -0.6 601,937 + AMB_RS02870 0.28 -0.7 601,938 - AMB_RS02870 0.28 +0.1 601,938 - AMB_RS02870 0.28 +0.9 601,960 + AMB_RS02870 0.30 -0.1 601,985 + AMB_RS02870 0.31 +1.6 601,985 + AMB_RS02870 0.31 +0.6 601,986 - AMB_RS02870 0.31 -0.1 601,986 - AMB_RS02870 0.31 +0.2 601,986 - AMB_RS02870 0.31 -0.3 601,986 - AMB_RS02870 0.31 +0.1 601,986 - AMB_RS02870 0.31 +0.6 601,997 + AMB_RS02870 0.32 +0.3 601,997 + AMB_RS02870 0.32 +0.1 601,997 + AMB_RS02870 0.32 +0.3 601,997 + AMB_RS02870 0.32 -1.3 601,997 + AMB_RS02870 0.32 -0.8 601,997 + AMB_RS02870 0.32 -0.4 601,998 - AMB_RS02870 0.32 +1.8 601,998 - AMB_RS02870 0.32 -0.1 601,998 - AMB_RS02870 0.32 +0.3 602,033 + AMB_RS02870 0.34 +0.9 602,033 + AMB_RS02870 0.34 -0.2 602,033 + AMB_RS02870 0.34 -1.3 602,033 + AMB_RS02870 0.34 -2.3 602,034 - AMB_RS02870 0.34 -0.8 602,058 - AMB_RS02870 0.35 +0.5 602,058 - AMB_RS02870 0.35 +0.4 603,052 + +0.1 603,052 + +0.3 603,053 - -0.3 603,258 + +0.6 603,258 + -1.1 603,259 - +0.1 603,259 - +0.2 603,259 - +0.5
Or see this region's nucleotide sequence