Experiment: 30_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02595 and AMB_RS02600 are separated by 22 nucleotides AMB_RS02600 and AMB_RS02605 are separated by 11 nucleotides AMB_RS02605 and AMB_RS02610 are separated by 194 nucleotides AMB_RS02610 and AMB_RS02615 are separated by 4 nucleotides
AMB_RS02595: AMB_RS02595 - flagellar hook protein FlgE, at 539,058 to 541,589
_RS02595
AMB_RS02600: AMB_RS02600 - flagellar hook capping protein, at 541,612 to 542,436
_RS02600
AMB_RS02605: AMB_RS02605 - flagellar hook-length control protein FliK, at 542,448 to 544,211
_RS02605
AMB_RS02610: AMB_RS02610 - hypothetical protein, at 544,406 to 544,666
_RS02610
AMB_RS02615: AMB_RS02615 - competence/damage-inducible protein A, at 544,671 to 545,405
_RS02615
Position (kb) 542
543
544
545 Strain fitness (log2 ratio) -2
-1
0
1
2 at 541.483 kb on + strand at 541.483 kb on + strand at 541.484 kb on - strand at 541.484 kb on - strand at 541.579 kb on + strand at 541.647 kb on + strand at 541.647 kb on + strand at 541.647 kb on + strand at 541.770 kb on + strand, within AMB_RS02600 at 541.932 kb on - strand, within AMB_RS02600 at 541.932 kb on - strand, within AMB_RS02600 at 541.986 kb on + strand, within AMB_RS02600 at 541.987 kb on - strand, within AMB_RS02600 at 541.987 kb on - strand, within AMB_RS02600 at 541.987 kb on - strand, within AMB_RS02600 at 542.087 kb on + strand, within AMB_RS02600 at 542.087 kb on + strand, within AMB_RS02600 at 542.087 kb on + strand, within AMB_RS02600 at 542.087 kb on + strand, within AMB_RS02600 at 542.088 kb on - strand, within AMB_RS02600 at 542.088 kb on - strand, within AMB_RS02600 at 542.088 kb on - strand, within AMB_RS02600 at 542.088 kb on - strand, within AMB_RS02600 at 542.156 kb on + strand, within AMB_RS02600 at 542.156 kb on + strand, within AMB_RS02600 at 542.157 kb on - strand, within AMB_RS02600 at 542.157 kb on - strand, within AMB_RS02600 at 542.157 kb on - strand, within AMB_RS02600 at 542.341 kb on - strand, within AMB_RS02600 at 542.450 kb on - strand at 542.450 kb on - strand at 542.792 kb on + strand, within AMB_RS02605 at 542.793 kb on - strand, within AMB_RS02605 at 542.793 kb on - strand, within AMB_RS02605 at 542.793 kb on - strand, within AMB_RS02605 at 542.793 kb on - strand, within AMB_RS02605 at 542.793 kb on - strand, within AMB_RS02605 at 542.803 kb on + strand, within AMB_RS02605 at 542.803 kb on + strand, within AMB_RS02605 at 542.804 kb on - strand, within AMB_RS02605 at 543.290 kb on + strand, within AMB_RS02605 at 543.290 kb on + strand, within AMB_RS02605 at 543.291 kb on - strand, within AMB_RS02605 at 543.291 kb on - strand, within AMB_RS02605 at 544.410 kb on + strand at 544.410 kb on + strand at 544.410 kb on + strand at 544.410 kb on + strand at 544.410 kb on + strand at 544.410 kb on + strand at 544.410 kb on + strand at 544.411 kb on - strand at 544.411 kb on - strand at 544.411 kb on - strand at 544.411 kb on - strand at 544.411 kb on - strand at 544.614 kb on + strand, within AMB_RS02610 at 544.614 kb on + strand, within AMB_RS02610 at 544.614 kb on + strand, within AMB_RS02610
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_3 remove 541,483 + -2.7 541,483 + +1.3 541,484 - +0.3 541,484 - -0.4 541,579 + -0.2 541,647 + +0.1 541,647 + -2.5 541,647 + -0.0 541,770 + AMB_RS02600 0.19 +1.1 541,932 - AMB_RS02600 0.39 -1.6 541,932 - AMB_RS02600 0.39 -0.7 541,986 + AMB_RS02600 0.45 +1.4 541,987 - AMB_RS02600 0.45 -1.6 541,987 - AMB_RS02600 0.45 -0.1 541,987 - AMB_RS02600 0.45 -0.9 542,087 + AMB_RS02600 0.58 -0.2 542,087 + AMB_RS02600 0.58 +2.0 542,087 + AMB_RS02600 0.58 +0.2 542,087 + AMB_RS02600 0.58 -0.7 542,088 - AMB_RS02600 0.58 -0.3 542,088 - AMB_RS02600 0.58 +0.7 542,088 - AMB_RS02600 0.58 -1.7 542,088 - AMB_RS02600 0.58 +0.2 542,156 + AMB_RS02600 0.66 +0.3 542,156 + AMB_RS02600 0.66 -0.2 542,157 - AMB_RS02600 0.66 -0.1 542,157 - AMB_RS02600 0.66 -0.4 542,157 - AMB_RS02600 0.66 +0.8 542,341 - AMB_RS02600 0.88 -0.0 542,450 - -0.5 542,450 - +0.4 542,792 + AMB_RS02605 0.20 +0.1 542,793 - AMB_RS02605 0.20 -0.6 542,793 - AMB_RS02605 0.20 -0.4 542,793 - AMB_RS02605 0.20 -0.5 542,793 - AMB_RS02605 0.20 -1.0 542,793 - AMB_RS02605 0.20 +0.6 542,803 + AMB_RS02605 0.20 -0.3 542,803 + AMB_RS02605 0.20 -0.1 542,804 - AMB_RS02605 0.20 -1.3 543,290 + AMB_RS02605 0.48 -0.7 543,290 + AMB_RS02605 0.48 -1.0 543,291 - AMB_RS02605 0.48 -0.1 543,291 - AMB_RS02605 0.48 -0.0 544,410 + +0.9 544,410 + -0.0 544,410 + -0.9 544,410 + -1.1 544,410 + -0.7 544,410 + -0.3 544,410 + +0.5 544,411 - -0.4 544,411 - -1.3 544,411 - +0.3 544,411 - -0.6 544,411 - -0.9 544,614 + AMB_RS02610 0.80 -0.1 544,614 + AMB_RS02610 0.80 -0.4 544,614 + AMB_RS02610 0.80 -0.6
Or see this region's nucleotide sequence