Experiment: 30_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02175 and AMB_RS02180 are separated by 150 nucleotides AMB_RS02180 and AMB_RS02185 are separated by 159 nucleotides
AMB_RS02175: AMB_RS02175 - hypothetical protein, at 456,310 to 457,047
_RS02175
AMB_RS02180: AMB_RS02180 - double-strand break repair protein AddB, at 457,198 to 460,125
_RS02180
AMB_RS02185: AMB_RS02185 - C4-dicarboxylate ABC transporter, at 460,285 to 461,313
_RS02185
Position (kb) 457
458
459
460
461 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 456.198 kb on - strand at 456.198 kb on - strand at 456.210 kb on + strand at 456.211 kb on - strand at 456.211 kb on - strand at 456.211 kb on - strand at 456.311 kb on + strand at 456.311 kb on + strand at 456.311 kb on + strand at 456.312 kb on - strand at 456.312 kb on - strand at 456.312 kb on - strand at 456.313 kb on + strand at 456.313 kb on + strand at 456.313 kb on + strand at 456.314 kb on - strand at 456.314 kb on - strand at 456.314 kb on - strand at 456.411 kb on + strand, within AMB_RS02175 at 456.411 kb on + strand, within AMB_RS02175 at 456.417 kb on - strand, within AMB_RS02175 at 456.417 kb on - strand, within AMB_RS02175 at 456.417 kb on - strand, within AMB_RS02175 at 456.443 kb on + strand, within AMB_RS02175 at 456.443 kb on + strand, within AMB_RS02175 at 456.444 kb on - strand, within AMB_RS02175 at 456.548 kb on + strand, within AMB_RS02175 at 456.548 kb on + strand, within AMB_RS02175 at 456.566 kb on + strand, within AMB_RS02175 at 456.566 kb on + strand, within AMB_RS02175 at 456.599 kb on + strand, within AMB_RS02175 at 456.599 kb on + strand, within AMB_RS02175 at 456.599 kb on + strand, within AMB_RS02175 at 456.599 kb on + strand, within AMB_RS02175 at 456.599 kb on + strand, within AMB_RS02175 at 456.600 kb on - strand, within AMB_RS02175 at 456.744 kb on + strand, within AMB_RS02175 at 456.745 kb on - strand, within AMB_RS02175 at 456.816 kb on + strand, within AMB_RS02175 at 456.836 kb on + strand, within AMB_RS02175 at 456.836 kb on + strand, within AMB_RS02175 at 456.836 kb on + strand, within AMB_RS02175 at 456.836 kb on + strand, within AMB_RS02175 at 456.837 kb on - strand, within AMB_RS02175 at 456.855 kb on + strand, within AMB_RS02175 at 456.855 kb on + strand, within AMB_RS02175 at 456.905 kb on + strand, within AMB_RS02175 at 456.905 kb on + strand, within AMB_RS02175 at 456.905 kb on + strand, within AMB_RS02175 at 456.905 kb on + strand, within AMB_RS02175 at 456.905 kb on + strand, within AMB_RS02175 at 456.905 kb on + strand, within AMB_RS02175 at 456.905 kb on + strand, within AMB_RS02175 at 456.905 kb on + strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 456.906 kb on - strand, within AMB_RS02175 at 457.114 kb on + strand at 457.115 kb on - strand at 459.350 kb on - strand, within AMB_RS02180 at 459.425 kb on - strand, within AMB_RS02180 at 460.124 kb on - strand at 460.165 kb on + strand at 460.165 kb on + strand at 460.165 kb on + strand at 460.165 kb on + strand at 460.165 kb on + strand at 460.166 kb on - strand at 460.166 kb on - strand at 460.166 kb on - strand at 460.166 kb on - strand at 460.166 kb on - strand at 460.166 kb on - strand at 460.166 kb on - strand at 460.216 kb on + strand at 460.217 kb on - strand at 460.507 kb on + strand, within AMB_RS02185 at 460.507 kb on + strand, within AMB_RS02185 at 460.507 kb on + strand, within AMB_RS02185 at 460.507 kb on + strand, within AMB_RS02185 at 460.508 kb on - strand, within AMB_RS02185 at 460.508 kb on - strand, within AMB_RS02185 at 460.508 kb on - strand, within AMB_RS02185 at 460.508 kb on - strand, within AMB_RS02185 at 460.508 kb on - strand, within AMB_RS02185 at 460.508 kb on - strand, within AMB_RS02185 at 460.583 kb on - strand, within AMB_RS02185 at 460.594 kb on + strand, within AMB_RS02185 at 460.654 kb on + strand, within AMB_RS02185 at 460.654 kb on + strand, within AMB_RS02185 at 460.654 kb on + strand, within AMB_RS02185 at 460.654 kb on + strand, within AMB_RS02185 at 460.655 kb on - strand, within AMB_RS02185 at 460.655 kb on - strand, within AMB_RS02185 at 460.655 kb on - strand, within AMB_RS02185 at 460.897 kb on + strand, within AMB_RS02185 at 460.897 kb on + strand, within AMB_RS02185 at 460.897 kb on + strand, within AMB_RS02185 at 460.897 kb on + strand, within AMB_RS02185 at 460.897 kb on + strand, within AMB_RS02185 at 460.897 kb on + strand, within AMB_RS02185 at 460.897 kb on + strand, within AMB_RS02185 at 460.897 kb on + strand, within AMB_RS02185 at 460.898 kb on - strand, within AMB_RS02185 at 460.898 kb on - strand, within AMB_RS02185 at 460.898 kb on - strand, within AMB_RS02185 at 460.898 kb on - strand, within AMB_RS02185 at 460.898 kb on - strand, within AMB_RS02185 at 460.898 kb on - strand, within AMB_RS02185 at 460.898 kb on - strand, within AMB_RS02185 at 460.898 kb on - strand, within AMB_RS02185 at 460.898 kb on - strand, within AMB_RS02185
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_3 remove 456,198 - -0.2 456,198 - +0.2 456,210 + +0.0 456,211 - -1.2 456,211 - +0.2 456,211 - +0.7 456,311 + -1.3 456,311 + -1.0 456,311 + +0.7 456,312 - +2.5 456,312 - -0.4 456,312 - +1.0 456,313 + +0.3 456,313 + -0.3 456,313 + -0.1 456,314 - -0.4 456,314 - +0.5 456,314 - +0.6 456,411 + AMB_RS02175 0.14 -0.4 456,411 + AMB_RS02175 0.14 +1.4 456,417 - AMB_RS02175 0.14 +0.7 456,417 - AMB_RS02175 0.14 -0.2 456,417 - AMB_RS02175 0.14 -1.2 456,443 + AMB_RS02175 0.18 +0.7 456,443 + AMB_RS02175 0.18 -0.6 456,444 - AMB_RS02175 0.18 +0.5 456,548 + AMB_RS02175 0.32 -2.0 456,548 + AMB_RS02175 0.32 +0.1 456,566 + AMB_RS02175 0.35 -2.6 456,566 + AMB_RS02175 0.35 -1.7 456,599 + AMB_RS02175 0.39 -0.3 456,599 + AMB_RS02175 0.39 -0.6 456,599 + AMB_RS02175 0.39 -0.6 456,599 + AMB_RS02175 0.39 -0.1 456,599 + AMB_RS02175 0.39 +1.4 456,600 - AMB_RS02175 0.39 -0.2 456,744 + AMB_RS02175 0.59 +0.1 456,745 - AMB_RS02175 0.59 -1.1 456,816 + AMB_RS02175 0.69 +0.5 456,836 + AMB_RS02175 0.71 +0.3 456,836 + AMB_RS02175 0.71 -0.3 456,836 + AMB_RS02175 0.71 -1.7 456,836 + AMB_RS02175 0.71 +0.5 456,837 - AMB_RS02175 0.71 +0.7 456,855 + AMB_RS02175 0.74 +0.0 456,855 + AMB_RS02175 0.74 -0.6 456,905 + AMB_RS02175 0.81 -1.5 456,905 + AMB_RS02175 0.81 -2.7 456,905 + AMB_RS02175 0.81 -0.2 456,905 + AMB_RS02175 0.81 -2.7 456,905 + AMB_RS02175 0.81 -1.3 456,905 + AMB_RS02175 0.81 +0.6 456,905 + AMB_RS02175 0.81 +0.3 456,905 + AMB_RS02175 0.81 -1.4 456,906 - AMB_RS02175 0.81 -0.5 456,906 - AMB_RS02175 0.81 -2.7 456,906 - AMB_RS02175 0.81 -0.2 456,906 - AMB_RS02175 0.81 +0.2 456,906 - AMB_RS02175 0.81 -0.7 456,906 - AMB_RS02175 0.81 +0.2 456,906 - AMB_RS02175 0.81 +0.3 456,906 - AMB_RS02175 0.81 +0.0 456,906 - AMB_RS02175 0.81 +0.1 456,906 - AMB_RS02175 0.81 -2.8 456,906 - AMB_RS02175 0.81 -4.1 457,114 + -0.0 457,115 - -2.3 459,350 - AMB_RS02180 0.73 -0.5 459,425 - AMB_RS02180 0.76 -1.3 460,124 - -2.4 460,165 + +0.3 460,165 + -0.7 460,165 + -0.4 460,165 + -1.3 460,165 + -0.8 460,166 - -0.6 460,166 - -0.7 460,166 - +0.8 460,166 - -3.0 460,166 - +0.1 460,166 - +0.6 460,166 - -1.2 460,216 + +0.0 460,217 - -0.6 460,507 + AMB_RS02185 0.22 +0.5 460,507 + AMB_RS02185 0.22 -0.2 460,507 + AMB_RS02185 0.22 +1.5 460,507 + AMB_RS02185 0.22 +0.2 460,508 - AMB_RS02185 0.22 -0.2 460,508 - AMB_RS02185 0.22 -0.1 460,508 - AMB_RS02185 0.22 +0.1 460,508 - AMB_RS02185 0.22 +0.1 460,508 - AMB_RS02185 0.22 +0.0 460,508 - AMB_RS02185 0.22 +0.5 460,583 - AMB_RS02185 0.29 -0.8 460,594 + AMB_RS02185 0.30 -2.3 460,654 + AMB_RS02185 0.36 -2.0 460,654 + AMB_RS02185 0.36 -0.1 460,654 + AMB_RS02185 0.36 +0.5 460,654 + AMB_RS02185 0.36 -1.1 460,655 - AMB_RS02185 0.36 -2.1 460,655 - AMB_RS02185 0.36 +0.1 460,655 - AMB_RS02185 0.36 +0.6 460,897 + AMB_RS02185 0.59 -0.2 460,897 + AMB_RS02185 0.59 +0.2 460,897 + AMB_RS02185 0.59 -0.6 460,897 + AMB_RS02185 0.59 +0.3 460,897 + AMB_RS02185 0.59 -0.8 460,897 + AMB_RS02185 0.59 -0.3 460,897 + AMB_RS02185 0.59 -0.7 460,897 + AMB_RS02185 0.59 +0.4 460,898 - AMB_RS02185 0.60 -0.2 460,898 - AMB_RS02185 0.60 +0.5 460,898 - AMB_RS02185 0.60 -2.5 460,898 - AMB_RS02185 0.60 +0.0 460,898 - AMB_RS02185 0.60 -0.3 460,898 - AMB_RS02185 0.60 -0.8 460,898 - AMB_RS02185 0.60 +0.2 460,898 - AMB_RS02185 0.60 +1.3 460,898 - AMB_RS02185 0.60 -0.2
Or see this region's nucleotide sequence