Experiment: 30_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01690 and AMB_RS01695 are separated by 148 nucleotides AMB_RS01695 and AMB_RS01700 are separated by 10 nucleotides AMB_RS01700 and AMB_RS01705 are separated by 24 nucleotides AMB_RS01705 and AMB_RS01710 are separated by 16 nucleotides
AMB_RS01690: AMB_RS01690 - serine phosphatase, at 372,247 to 373,914
_RS01690
AMB_RS01695: AMB_RS01695 - hypothetical protein, at 374,063 to 374,281
_RS01695
AMB_RS01700: AMB_RS01700 - hypothetical protein, at 374,292 to 374,747
_RS01700
AMB_RS01705: AMB_RS01705 - alpha/beta hydrolase, at 374,772 to 375,566
_RS01705
AMB_RS01710: AMB_RS01710 - glycosyl transferase, at 375,583 to 376,782
_RS01710
Position (kb) 374
375
376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 373.960 kb on + strand at 373.967 kb on + strand at 373.967 kb on + strand at 373.968 kb on - strand at 373.969 kb on + strand at 373.969 kb on + strand at 373.969 kb on + strand at 373.969 kb on + strand at 373.969 kb on + strand at 373.969 kb on + strand at 373.970 kb on - strand at 373.970 kb on - strand at 373.970 kb on - strand at 373.974 kb on - strand at 373.974 kb on - strand at 374.020 kb on + strand at 374.020 kb on + strand at 374.020 kb on + strand at 374.021 kb on - strand at 374.132 kb on + strand, within AMB_RS01695 at 374.133 kb on - strand, within AMB_RS01695 at 374.133 kb on - strand, within AMB_RS01695 at 374.347 kb on + strand, within AMB_RS01700 at 374.353 kb on + strand, within AMB_RS01700 at 374.354 kb on - strand, within AMB_RS01700 at 374.354 kb on - strand, within AMB_RS01700 at 374.512 kb on + strand, within AMB_RS01700 at 374.512 kb on + strand, within AMB_RS01700 at 374.512 kb on + strand, within AMB_RS01700 at 374.512 kb on + strand, within AMB_RS01700 at 374.513 kb on - strand, within AMB_RS01700 at 374.513 kb on - strand, within AMB_RS01700 at 374.513 kb on - strand, within AMB_RS01700 at 374.513 kb on - strand, within AMB_RS01700 at 374.674 kb on - strand, within AMB_RS01700 at 374.759 kb on + strand at 374.759 kb on + strand at 374.774 kb on - strand at 374.826 kb on + strand at 374.826 kb on + strand at 374.827 kb on - strand at 374.827 kb on - strand at 374.827 kb on - strand at 374.827 kb on - strand at 375.061 kb on + strand, within AMB_RS01705 at 375.062 kb on - strand, within AMB_RS01705 at 375.266 kb on + strand, within AMB_RS01705 at 375.319 kb on + strand, within AMB_RS01705 at 375.355 kb on + strand, within AMB_RS01705 at 375.355 kb on + strand, within AMB_RS01705 at 375.419 kb on + strand, within AMB_RS01705 at 375.419 kb on + strand, within AMB_RS01705 at 375.420 kb on - strand, within AMB_RS01705 at 375.420 kb on - strand, within AMB_RS01705 at 375.439 kb on + strand, within AMB_RS01705 at 375.516 kb on + strand at 375.519 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_3 remove 373,960 + +1.0 373,967 + -0.1 373,967 + -0.3 373,968 - -1.9 373,969 + -0.3 373,969 + -0.3 373,969 + +0.0 373,969 + +1.0 373,969 + -0.3 373,969 + -1.2 373,970 - -0.5 373,970 - -0.2 373,970 - +0.5 373,974 - +0.3 373,974 - +0.6 374,020 + -0.4 374,020 + +0.6 374,020 + -0.5 374,021 - -0.6 374,132 + AMB_RS01695 0.32 +2.3 374,133 - AMB_RS01695 0.32 -1.6 374,133 - AMB_RS01695 0.32 -0.3 374,347 + AMB_RS01700 0.12 -0.2 374,353 + AMB_RS01700 0.13 -1.3 374,354 - AMB_RS01700 0.14 +2.3 374,354 - AMB_RS01700 0.14 +3.1 374,512 + AMB_RS01700 0.48 -1.1 374,512 + AMB_RS01700 0.48 -0.5 374,512 + AMB_RS01700 0.48 -0.9 374,512 + AMB_RS01700 0.48 -2.7 374,513 - AMB_RS01700 0.48 +0.3 374,513 - AMB_RS01700 0.48 -0.7 374,513 - AMB_RS01700 0.48 -0.0 374,513 - AMB_RS01700 0.48 +0.1 374,674 - AMB_RS01700 0.84 +0.3 374,759 + -2.9 374,759 + +0.2 374,774 - +0.1 374,826 + -1.4 374,826 + -3.0 374,827 - +0.5 374,827 - +0.1 374,827 - -0.2 374,827 - -0.2 375,061 + AMB_RS01705 0.36 +0.3 375,062 - AMB_RS01705 0.36 -0.4 375,266 + AMB_RS01705 0.62 -0.7 375,319 + AMB_RS01705 0.69 +0.7 375,355 + AMB_RS01705 0.73 -0.2 375,355 + AMB_RS01705 0.73 -0.7 375,419 + AMB_RS01705 0.81 -0.1 375,419 + AMB_RS01705 0.81 -0.2 375,420 - AMB_RS01705 0.82 -0.7 375,420 - AMB_RS01705 0.82 +1.1 375,439 + AMB_RS01705 0.84 -0.5 375,516 + -0.7 375,519 + +0.3
Or see this region's nucleotide sequence