Experiment: 30_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00915 and AMB_RS00920 are separated by 40 nucleotides AMB_RS00920 and AMB_RS00925 overlap by 4 nucleotides AMB_RS00925 and AMB_RS00930 overlap by 4 nucleotides
AMB_RS00915: AMB_RS00915 - indolepyruvate oxidoreductase subunit B, at 207,338 to 208,846
_RS00915
AMB_RS00920: AMB_RS00920 - secretion protein HlyD, at 208,887 to 209,828
_RS00920
AMB_RS00925: AMB_RS00925 - ABC transporter ATP-binding protein, at 209,825 to 210,751
_RS00925
AMB_RS00930: AMB_RS00930 - ABC transporter permease, at 210,748 to 211,890
_RS00930
Position (kb) 208
209
210 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 208.109 kb on + strand, within AMB_RS00915 at 208.109 kb on + strand, within AMB_RS00915 at 208.125 kb on - strand, within AMB_RS00915 at 208.136 kb on + strand, within AMB_RS00915 at 208.605 kb on + strand, within AMB_RS00915 at 208.605 kb on + strand, within AMB_RS00915 at 208.646 kb on + strand, within AMB_RS00915 at 208.959 kb on + strand at 208.960 kb on - strand at 208.960 kb on - strand at 208.974 kb on + strand at 208.974 kb on + strand at 208.975 kb on - strand at 208.975 kb on - strand at 208.975 kb on - strand at 208.975 kb on - strand at 208.975 kb on - strand at 208.975 kb on - strand at 209.269 kb on - strand, within AMB_RS00920 at 209.269 kb on - strand, within AMB_RS00920 at 209.269 kb on - strand, within AMB_RS00920 at 209.269 kb on - strand, within AMB_RS00920 at 209.269 kb on - strand, within AMB_RS00920 at 209.499 kb on + strand, within AMB_RS00920 at 209.499 kb on + strand, within AMB_RS00920 at 209.499 kb on + strand, within AMB_RS00920 at 209.500 kb on - strand, within AMB_RS00920 at 209.631 kb on + strand, within AMB_RS00920 at 209.631 kb on + strand, within AMB_RS00920 at 209.694 kb on + strand, within AMB_RS00920 at 209.695 kb on - strand, within AMB_RS00920 at 209.712 kb on + strand, within AMB_RS00920 at 209.712 kb on + strand, within AMB_RS00920 at 209.712 kb on + strand, within AMB_RS00920 at 209.712 kb on + strand, within AMB_RS00920 at 209.713 kb on - strand, within AMB_RS00920 at 209.713 kb on - strand, within AMB_RS00920 at 209.786 kb on + strand at 209.786 kb on + strand at 209.787 kb on - strand at 210.071 kb on + strand, within AMB_RS00925 at 210.072 kb on - strand, within AMB_RS00925 at 210.072 kb on - strand, within AMB_RS00925 at 210.072 kb on - strand, within AMB_RS00925 at 210.072 kb on - strand, within AMB_RS00925 at 210.072 kb on - strand, within AMB_RS00925 at 210.095 kb on + strand, within AMB_RS00925 at 210.095 kb on + strand, within AMB_RS00925 at 210.096 kb on - strand, within AMB_RS00925 at 210.143 kb on + strand, within AMB_RS00925 at 210.144 kb on - strand, within AMB_RS00925 at 210.404 kb on + strand, within AMB_RS00925 at 210.404 kb on + strand, within AMB_RS00925 at 210.404 kb on + strand, within AMB_RS00925 at 210.404 kb on + strand, within AMB_RS00925 at 210.404 kb on + strand, within AMB_RS00925 at 210.404 kb on + strand, within AMB_RS00925 at 210.404 kb on + strand, within AMB_RS00925 at 210.404 kb on + strand, within AMB_RS00925 at 210.405 kb on - strand, within AMB_RS00925 at 210.405 kb on - strand, within AMB_RS00925 at 210.405 kb on - strand, within AMB_RS00925 at 210.405 kb on - strand, within AMB_RS00925 at 210.405 kb on - strand, within AMB_RS00925 at 210.405 kb on - strand, within AMB_RS00925 at 210.405 kb on - strand, within AMB_RS00925 at 210.440 kb on + strand, within AMB_RS00925 at 210.440 kb on + strand, within AMB_RS00925 at 210.440 kb on + strand, within AMB_RS00925 at 210.440 kb on + strand, within AMB_RS00925 at 210.441 kb on - strand, within AMB_RS00925 at 210.450 kb on - strand, within AMB_RS00925
Per-strain Table
Position Strand Gene LocusTag Fraction 30_nonmag_3 remove 208,109 + AMB_RS00915 0.51 +0.5 208,109 + AMB_RS00915 0.51 -0.1 208,125 - AMB_RS00915 0.52 -0.5 208,136 + AMB_RS00915 0.53 +0.3 208,605 + AMB_RS00915 0.84 +1.9 208,605 + AMB_RS00915 0.84 +0.1 208,646 + AMB_RS00915 0.87 +0.4 208,959 + -0.6 208,960 - -0.4 208,960 - +0.3 208,974 + +0.1 208,974 + -1.1 208,975 - -0.1 208,975 - -0.2 208,975 - -0.5 208,975 - +0.4 208,975 - +0.3 208,975 - +0.6 209,269 - AMB_RS00920 0.41 -0.7 209,269 - AMB_RS00920 0.41 +0.3 209,269 - AMB_RS00920 0.41 +0.1 209,269 - AMB_RS00920 0.41 -1.1 209,269 - AMB_RS00920 0.41 +0.7 209,499 + AMB_RS00920 0.65 +0.2 209,499 + AMB_RS00920 0.65 -0.2 209,499 + AMB_RS00920 0.65 -1.0 209,500 - AMB_RS00920 0.65 +0.4 209,631 + AMB_RS00920 0.79 +0.4 209,631 + AMB_RS00920 0.79 -1.1 209,694 + AMB_RS00920 0.86 +0.0 209,695 - AMB_RS00920 0.86 -3.0 209,712 + AMB_RS00920 0.88 +1.1 209,712 + AMB_RS00920 0.88 +1.9 209,712 + AMB_RS00920 0.88 +0.5 209,712 + AMB_RS00920 0.88 +0.4 209,713 - AMB_RS00920 0.88 -0.0 209,713 - AMB_RS00920 0.88 -1.1 209,786 + -0.2 209,786 + +1.0 209,787 - -0.5 210,071 + AMB_RS00925 0.27 -2.7 210,072 - AMB_RS00925 0.27 -0.2 210,072 - AMB_RS00925 0.27 -1.2 210,072 - AMB_RS00925 0.27 +0.5 210,072 - AMB_RS00925 0.27 +0.1 210,072 - AMB_RS00925 0.27 +0.4 210,095 + AMB_RS00925 0.29 +0.3 210,095 + AMB_RS00925 0.29 +0.4 210,096 - AMB_RS00925 0.29 +0.2 210,143 + AMB_RS00925 0.34 -0.4 210,144 - AMB_RS00925 0.34 +0.1 210,404 + AMB_RS00925 0.62 -0.9 210,404 + AMB_RS00925 0.62 -0.1 210,404 + AMB_RS00925 0.62 -1.2 210,404 + AMB_RS00925 0.62 -2.2 210,404 + AMB_RS00925 0.62 -1.7 210,404 + AMB_RS00925 0.62 -3.0 210,404 + AMB_RS00925 0.62 +0.5 210,404 + AMB_RS00925 0.62 -3.0 210,405 - AMB_RS00925 0.63 -0.6 210,405 - AMB_RS00925 0.63 +0.8 210,405 - AMB_RS00925 0.63 -0.1 210,405 - AMB_RS00925 0.63 +0.2 210,405 - AMB_RS00925 0.63 -0.2 210,405 - AMB_RS00925 0.63 -0.3 210,405 - AMB_RS00925 0.63 -0.4 210,440 + AMB_RS00925 0.66 -0.8 210,440 + AMB_RS00925 0.66 +0.2 210,440 + AMB_RS00925 0.66 -0.6 210,440 + AMB_RS00925 0.66 -1.2 210,441 - AMB_RS00925 0.66 -1.1 210,450 - AMB_RS00925 0.67 +0.0
Or see this region's nucleotide sequence