Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS22015 and ABIE41_RS22020 are separated by 2 nucleotides ABIE41_RS22020 and ABIE41_RS22025 are separated by 146 nucleotides
ABIE41_RS22015: ABIE41_RS22015 - ABC transporter permease, at 4,525,927 to 4,526,835
_RS22015
ABIE41_RS22020: ABIE41_RS22020 - ABC transporter permease, at 4,526,838 to 4,527,779
_RS22020
ABIE41_RS22025: ABIE41_RS22025 - ABC transporter substrate-binding protein, at 4,527,926 to 4,529,527
_RS22025
Position (kb) 4526
4527
4528 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4526.160 kb on + strand, within ABIE41_RS22015 at 4526.161 kb on - strand, within ABIE41_RS22015 at 4526.161 kb on - strand, within ABIE41_RS22015 at 4526.161 kb on - strand, within ABIE41_RS22015 at 4526.162 kb on + strand, within ABIE41_RS22015 at 4526.162 kb on + strand, within ABIE41_RS22015 at 4526.162 kb on + strand, within ABIE41_RS22015 at 4526.162 kb on + strand, within ABIE41_RS22015 at 4526.162 kb on + strand, within ABIE41_RS22015 at 4526.162 kb on + strand, within ABIE41_RS22015 at 4526.162 kb on + strand, within ABIE41_RS22015 at 4526.162 kb on + strand, within ABIE41_RS22015 at 4526.163 kb on - strand, within ABIE41_RS22015 at 4526.163 kb on - strand, within ABIE41_RS22015 at 4526.163 kb on - strand, within ABIE41_RS22015 at 4526.163 kb on - strand, within ABIE41_RS22015 at 4526.163 kb on - strand, within ABIE41_RS22015 at 4526.163 kb on - strand, within ABIE41_RS22015 at 4526.163 kb on - strand, within ABIE41_RS22015 at 4526.261 kb on + strand, within ABIE41_RS22015 at 4526.261 kb on + strand, within ABIE41_RS22015 at 4526.262 kb on - strand, within ABIE41_RS22015 at 4526.262 kb on - strand, within ABIE41_RS22015 at 4526.262 kb on - strand, within ABIE41_RS22015 at 4526.546 kb on + strand, within ABIE41_RS22015 at 4526.561 kb on + strand, within ABIE41_RS22015 at 4526.561 kb on + strand, within ABIE41_RS22015 at 4526.561 kb on + strand, within ABIE41_RS22015 at 4526.561 kb on + strand, within ABIE41_RS22015 at 4526.562 kb on - strand, within ABIE41_RS22015 at 4526.562 kb on - strand, within ABIE41_RS22015 at 4526.562 kb on - strand, within ABIE41_RS22015 at 4526.562 kb on - strand, within ABIE41_RS22015 at 4526.562 kb on - strand, within ABIE41_RS22015 at 4526.597 kb on + strand, within ABIE41_RS22015 at 4526.597 kb on + strand, within ABIE41_RS22015 at 4526.619 kb on + strand, within ABIE41_RS22015 at 4526.620 kb on - strand, within ABIE41_RS22015 at 4526.741 kb on + strand, within ABIE41_RS22015 at 4526.842 kb on + strand at 4526.847 kb on + strand at 4526.868 kb on - strand at 4526.868 kb on - strand at 4526.868 kb on - strand at 4526.869 kb on + strand at 4526.869 kb on + strand at 4526.869 kb on + strand at 4526.869 kb on + strand at 4526.870 kb on - strand at 4526.870 kb on - strand at 4526.870 kb on - strand at 4526.870 kb on - strand at 4526.870 kb on - strand at 4526.902 kb on + strand at 4526.903 kb on - strand at 4526.903 kb on - strand at 4526.903 kb on - strand at 4526.944 kb on + strand, within ABIE41_RS22020 at 4527.145 kb on + strand, within ABIE41_RS22020 at 4527.145 kb on + strand, within ABIE41_RS22020 at 4527.145 kb on + strand, within ABIE41_RS22020 at 4527.145 kb on + strand, within ABIE41_RS22020 at 4527.146 kb on - strand, within ABIE41_RS22020 at 4527.146 kb on - strand, within ABIE41_RS22020 at 4527.146 kb on - strand, within ABIE41_RS22020 at 4527.205 kb on + strand, within ABIE41_RS22020 at 4527.206 kb on - strand, within ABIE41_RS22020 at 4527.280 kb on + strand, within ABIE41_RS22020 at 4527.280 kb on + strand, within ABIE41_RS22020 at 4527.281 kb on - strand, within ABIE41_RS22020 at 4527.322 kb on + strand, within ABIE41_RS22020 at 4527.322 kb on + strand, within ABIE41_RS22020 at 4527.322 kb on + strand, within ABIE41_RS22020 at 4527.323 kb on - strand, within ABIE41_RS22020 at 4527.323 kb on - strand, within ABIE41_RS22020 at 4527.323 kb on - strand, within ABIE41_RS22020 at 4527.323 kb on - strand, within ABIE41_RS22020 at 4527.599 kb on - strand, within ABIE41_RS22020 at 4527.599 kb on - strand, within ABIE41_RS22020 at 4527.697 kb on + strand at 4527.697 kb on + strand at 4527.697 kb on + strand at 4527.697 kb on + strand at 4527.697 kb on + strand at 4527.697 kb on + strand at 4527.698 kb on - strand at 4527.698 kb on - strand at 4528.011 kb on + strand at 4528.011 kb on + strand at 4528.011 kb on + strand at 4528.011 kb on + strand at 4528.011 kb on + strand at 4528.012 kb on - strand at 4528.188 kb on + strand, within ABIE41_RS22025 at 4528.188 kb on + strand, within ABIE41_RS22025 at 4528.189 kb on - strand, within ABIE41_RS22025 at 4528.494 kb on + strand, within ABIE41_RS22025 at 4528.495 kb on - strand, within ABIE41_RS22025 at 4528.572 kb on + strand, within ABIE41_RS22025 at 4528.572 kb on + strand, within ABIE41_RS22025 at 4528.572 kb on + strand, within ABIE41_RS22025 at 4528.572 kb on + strand, within ABIE41_RS22025 at 4528.572 kb on + strand, within ABIE41_RS22025 at 4528.572 kb on + strand, within ABIE41_RS22025 at 4528.572 kb on + strand, within ABIE41_RS22025 at 4528.572 kb on + strand, within ABIE41_RS22025 at 4528.572 kb on + strand, within ABIE41_RS22025 at 4528.572 kb on + strand, within ABIE41_RS22025 at 4528.573 kb on - strand, within ABIE41_RS22025 at 4528.573 kb on - strand, within ABIE41_RS22025 at 4528.573 kb on - strand, within ABIE41_RS22025 at 4528.573 kb on - strand, within ABIE41_RS22025 at 4528.574 kb on - strand, within ABIE41_RS22025
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 4,526,160 + ABIE41_RS22015 0.26 +0.0 4,526,161 - ABIE41_RS22015 0.26 -0.5 4,526,161 - ABIE41_RS22015 0.26 -0.4 4,526,161 - ABIE41_RS22015 0.26 -0.2 4,526,162 + ABIE41_RS22015 0.26 +0.5 4,526,162 + ABIE41_RS22015 0.26 +0.7 4,526,162 + ABIE41_RS22015 0.26 -1.9 4,526,162 + ABIE41_RS22015 0.26 -0.8 4,526,162 + ABIE41_RS22015 0.26 +0.4 4,526,162 + ABIE41_RS22015 0.26 -1.0 4,526,162 + ABIE41_RS22015 0.26 -1.0 4,526,162 + ABIE41_RS22015 0.26 +0.5 4,526,163 - ABIE41_RS22015 0.26 -0.5 4,526,163 - ABIE41_RS22015 0.26 -0.3 4,526,163 - ABIE41_RS22015 0.26 -0.6 4,526,163 - ABIE41_RS22015 0.26 +1.8 4,526,163 - ABIE41_RS22015 0.26 +1.2 4,526,163 - ABIE41_RS22015 0.26 +0.1 4,526,163 - ABIE41_RS22015 0.26 +0.3 4,526,261 + ABIE41_RS22015 0.37 +0.3 4,526,261 + ABIE41_RS22015 0.37 +0.6 4,526,262 - ABIE41_RS22015 0.37 -2.0 4,526,262 - ABIE41_RS22015 0.37 +0.1 4,526,262 - ABIE41_RS22015 0.37 -0.5 4,526,546 + ABIE41_RS22015 0.68 +0.0 4,526,561 + ABIE41_RS22015 0.70 +0.6 4,526,561 + ABIE41_RS22015 0.70 -0.0 4,526,561 + ABIE41_RS22015 0.70 -0.1 4,526,561 + ABIE41_RS22015 0.70 +2.3 4,526,562 - ABIE41_RS22015 0.70 +0.5 4,526,562 - ABIE41_RS22015 0.70 -2.6 4,526,562 - ABIE41_RS22015 0.70 +0.0 4,526,562 - ABIE41_RS22015 0.70 -1.0 4,526,562 - ABIE41_RS22015 0.70 -0.9 4,526,597 + ABIE41_RS22015 0.74 -0.2 4,526,597 + ABIE41_RS22015 0.74 -0.4 4,526,619 + ABIE41_RS22015 0.76 -1.3 4,526,620 - ABIE41_RS22015 0.76 +0.0 4,526,741 + ABIE41_RS22015 0.90 +0.5 4,526,842 + +0.1 4,526,847 + +0.4 4,526,868 - -0.4 4,526,868 - +0.1 4,526,868 - -0.2 4,526,869 + +1.2 4,526,869 + +1.3 4,526,869 + -0.0 4,526,869 + +1.7 4,526,870 - +0.9 4,526,870 - -0.0 4,526,870 - -0.0 4,526,870 - +0.3 4,526,870 - +0.5 4,526,902 + +1.0 4,526,903 - +0.3 4,526,903 - +0.3 4,526,903 - +0.5 4,526,944 + ABIE41_RS22020 0.11 -0.4 4,527,145 + ABIE41_RS22020 0.33 +0.7 4,527,145 + ABIE41_RS22020 0.33 +0.7 4,527,145 + ABIE41_RS22020 0.33 +0.4 4,527,145 + ABIE41_RS22020 0.33 -0.9 4,527,146 - ABIE41_RS22020 0.33 -0.1 4,527,146 - ABIE41_RS22020 0.33 +0.5 4,527,146 - ABIE41_RS22020 0.33 -0.0 4,527,205 + ABIE41_RS22020 0.39 +0.3 4,527,206 - ABIE41_RS22020 0.39 +0.5 4,527,280 + ABIE41_RS22020 0.47 -0.7 4,527,280 + ABIE41_RS22020 0.47 -1.5 4,527,281 - ABIE41_RS22020 0.47 +1.1 4,527,322 + ABIE41_RS22020 0.51 -0.9 4,527,322 + ABIE41_RS22020 0.51 +1.2 4,527,322 + ABIE41_RS22020 0.51 +0.3 4,527,323 - ABIE41_RS22020 0.51 -0.9 4,527,323 - ABIE41_RS22020 0.51 -2.2 4,527,323 - ABIE41_RS22020 0.51 +0.5 4,527,323 - ABIE41_RS22020 0.51 +1.1 4,527,599 - ABIE41_RS22020 0.81 -0.3 4,527,599 - ABIE41_RS22020 0.81 +0.3 4,527,697 + -2.4 4,527,697 + +0.4 4,527,697 + +0.9 4,527,697 + -0.6 4,527,697 + -0.0 4,527,697 + -0.4 4,527,698 - -0.1 4,527,698 - -0.6 4,528,011 + -0.5 4,528,011 + +0.2 4,528,011 + +0.2 4,528,011 + +0.6 4,528,011 + +0.2 4,528,012 - -0.2 4,528,188 + ABIE41_RS22025 0.16 -0.0 4,528,188 + ABIE41_RS22025 0.16 +0.2 4,528,189 - ABIE41_RS22025 0.16 -0.7 4,528,494 + ABIE41_RS22025 0.35 -0.5 4,528,495 - ABIE41_RS22025 0.36 +0.2 4,528,572 + ABIE41_RS22025 0.40 +0.1 4,528,572 + ABIE41_RS22025 0.40 +1.3 4,528,572 + ABIE41_RS22025 0.40 +0.4 4,528,572 + ABIE41_RS22025 0.40 +1.5 4,528,572 + ABIE41_RS22025 0.40 +1.5 4,528,572 + ABIE41_RS22025 0.40 +0.4 4,528,572 + ABIE41_RS22025 0.40 -0.2 4,528,572 + ABIE41_RS22025 0.40 +0.2 4,528,572 + ABIE41_RS22025 0.40 +0.5 4,528,572 + ABIE41_RS22025 0.40 -1.0 4,528,573 - ABIE41_RS22025 0.40 +0.3 4,528,573 - ABIE41_RS22025 0.40 +0.1 4,528,573 - ABIE41_RS22025 0.40 -0.4 4,528,573 - ABIE41_RS22025 0.40 -0.2 4,528,574 - ABIE41_RS22025 0.40 -0.8
Or see this region's nucleotide sequence