Strain Fitness in Bosea sp. OAE506 around ABIE41_RS22010

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS22005 and ABIE41_RS22010 are separated by 99 nucleotidesABIE41_RS22010 and ABIE41_RS22015 are separated by 167 nucleotides ABIE41_RS22005: ABIE41_RS22005 - amidohydrolase/deacetylase family metallohydrolase, at 4,523,561 to 4,524,724 _RS22005 ABIE41_RS22010: ABIE41_RS22010 - N-carbamoyl-D-amino-acid hydrolase, at 4,524,824 to 4,525,759 _RS22010 ABIE41_RS22015: ABIE41_RS22015 - ABC transporter permease, at 4,525,927 to 4,526,835 _RS22015 Position (kb) 4524 4525 4526Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4523.859 kb on + strand, within ABIE41_RS22005at 4523.859 kb on + strand, within ABIE41_RS22005at 4523.860 kb on - strand, within ABIE41_RS22005at 4523.860 kb on - strand, within ABIE41_RS22005at 4524.117 kb on + strand, within ABIE41_RS22005at 4524.118 kb on - strand, within ABIE41_RS22005at 4524.118 kb on - strand, within ABIE41_RS22005at 4524.118 kb on - strand, within ABIE41_RS22005at 4524.118 kb on - strand, within ABIE41_RS22005at 4524.118 kb on - strand, within ABIE41_RS22005at 4524.351 kb on + strand, within ABIE41_RS22005at 4524.351 kb on + strand, within ABIE41_RS22005at 4524.352 kb on - strand, within ABIE41_RS22005at 4524.378 kb on + strand, within ABIE41_RS22005at 4524.379 kb on - strand, within ABIE41_RS22005at 4524.379 kb on - strand, within ABIE41_RS22005at 4524.379 kb on - strand, within ABIE41_RS22005at 4524.531 kb on + strand, within ABIE41_RS22005at 4524.727 kb on - strandat 4524.742 kb on + strandat 4524.742 kb on + strandat 4524.742 kb on + strandat 4524.743 kb on - strandat 4524.749 kb on - strandat 4524.800 kb on - strandat 4524.867 kb on + strandat 4524.868 kb on - strandat 4524.868 kb on - strandat 4524.868 kb on - strandat 4524.915 kb on + strandat 4524.915 kb on + strandat 4524.916 kb on - strandat 4524.916 kb on - strandat 4524.916 kb on - strandat 4525.054 kb on + strand, within ABIE41_RS22010at 4525.055 kb on - strand, within ABIE41_RS22010at 4525.086 kb on + strand, within ABIE41_RS22010at 4525.087 kb on - strand, within ABIE41_RS22010at 4525.173 kb on + strand, within ABIE41_RS22010at 4525.174 kb on - strand, within ABIE41_RS22010at 4525.218 kb on + strand, within ABIE41_RS22010at 4525.218 kb on + strand, within ABIE41_RS22010at 4525.218 kb on + strand, within ABIE41_RS22010at 4525.219 kb on - strand, within ABIE41_RS22010at 4525.314 kb on + strand, within ABIE41_RS22010at 4525.387 kb on - strand, within ABIE41_RS22010at 4526.160 kb on + strand, within ABIE41_RS22015at 4526.161 kb on - strand, within ABIE41_RS22015at 4526.161 kb on - strand, within ABIE41_RS22015at 4526.161 kb on - strand, within ABIE41_RS22015at 4526.162 kb on + strand, within ABIE41_RS22015at 4526.162 kb on + strand, within ABIE41_RS22015at 4526.162 kb on + strand, within ABIE41_RS22015at 4526.162 kb on + strand, within ABIE41_RS22015at 4526.162 kb on + strand, within ABIE41_RS22015at 4526.162 kb on + strand, within ABIE41_RS22015at 4526.162 kb on + strand, within ABIE41_RS22015at 4526.162 kb on + strand, within ABIE41_RS22015at 4526.163 kb on - strand, within ABIE41_RS22015at 4526.163 kb on - strand, within ABIE41_RS22015at 4526.163 kb on - strand, within ABIE41_RS22015at 4526.163 kb on - strand, within ABIE41_RS22015at 4526.163 kb on - strand, within ABIE41_RS22015at 4526.163 kb on - strand, within ABIE41_RS22015at 4526.163 kb on - strand, within ABIE41_RS22015at 4526.261 kb on + strand, within ABIE41_RS22015at 4526.261 kb on + strand, within ABIE41_RS22015at 4526.262 kb on - strand, within ABIE41_RS22015at 4526.262 kb on - strand, within ABIE41_RS22015at 4526.262 kb on - strand, within ABIE41_RS22015at 4526.546 kb on + strand, within ABIE41_RS22015at 4526.561 kb on + strand, within ABIE41_RS22015at 4526.561 kb on + strand, within ABIE41_RS22015at 4526.561 kb on + strand, within ABIE41_RS22015at 4526.561 kb on + strand, within ABIE41_RS22015at 4526.562 kb on - strand, within ABIE41_RS22015at 4526.562 kb on - strand, within ABIE41_RS22015at 4526.562 kb on - strand, within ABIE41_RS22015at 4526.562 kb on - strand, within ABIE41_RS22015at 4526.562 kb on - strand, within ABIE41_RS22015at 4526.597 kb on + strand, within ABIE41_RS22015at 4526.597 kb on + strand, within ABIE41_RS22015at 4526.619 kb on + strand, within ABIE41_RS22015at 4526.620 kb on - strand, within ABIE41_RS22015at 4526.741 kb on + strand, within ABIE41_RS22015

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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4,523,859 + ABIE41_RS22005 0.26 -0.8
4,523,859 + ABIE41_RS22005 0.26 +0.1
4,523,860 - ABIE41_RS22005 0.26 -1.3
4,523,860 - ABIE41_RS22005 0.26 +0.5
4,524,117 + ABIE41_RS22005 0.48 -0.0
4,524,118 - ABIE41_RS22005 0.48 +0.2
4,524,118 - ABIE41_RS22005 0.48 -0.6
4,524,118 - ABIE41_RS22005 0.48 +0.5
4,524,118 - ABIE41_RS22005 0.48 -0.5
4,524,118 - ABIE41_RS22005 0.48 +0.2
4,524,351 + ABIE41_RS22005 0.68 +0.2
4,524,351 + ABIE41_RS22005 0.68 -0.2
4,524,352 - ABIE41_RS22005 0.68 +1.5
4,524,378 + ABIE41_RS22005 0.70 +0.8
4,524,379 - ABIE41_RS22005 0.70 -0.1
4,524,379 - ABIE41_RS22005 0.70 +0.6
4,524,379 - ABIE41_RS22005 0.70 +0.0
4,524,531 + ABIE41_RS22005 0.83 +0.2
4,524,727 - +1.4
4,524,742 + -1.6
4,524,742 + -0.1
4,524,742 + -0.4
4,524,743 - -0.1
4,524,749 - -0.1
4,524,800 - +0.7
4,524,867 + +0.6
4,524,868 - -2.9
4,524,868 - -0.5
4,524,868 - +1.3
4,524,915 + -0.3
4,524,915 + -0.0
4,524,916 - +0.5
4,524,916 - +0.1
4,524,916 - -0.3
4,525,054 + ABIE41_RS22010 0.25 -0.1
4,525,055 - ABIE41_RS22010 0.25 +0.1
4,525,086 + ABIE41_RS22010 0.28 +0.4
4,525,087 - ABIE41_RS22010 0.28 -0.3
4,525,173 + ABIE41_RS22010 0.37 +1.5
4,525,174 - ABIE41_RS22010 0.37 +1.6
4,525,218 + ABIE41_RS22010 0.42 -0.0
4,525,218 + ABIE41_RS22010 0.42 +2.3
4,525,218 + ABIE41_RS22010 0.42 -0.7
4,525,219 - ABIE41_RS22010 0.42 +1.0
4,525,314 + ABIE41_RS22010 0.52 -0.1
4,525,387 - ABIE41_RS22010 0.60 -1.2
4,526,160 + ABIE41_RS22015 0.26 +0.0
4,526,161 - ABIE41_RS22015 0.26 -0.5
4,526,161 - ABIE41_RS22015 0.26 -0.4
4,526,161 - ABIE41_RS22015 0.26 -0.2
4,526,162 + ABIE41_RS22015 0.26 +0.5
4,526,162 + ABIE41_RS22015 0.26 +0.7
4,526,162 + ABIE41_RS22015 0.26 -1.9
4,526,162 + ABIE41_RS22015 0.26 -0.8
4,526,162 + ABIE41_RS22015 0.26 +0.4
4,526,162 + ABIE41_RS22015 0.26 -1.0
4,526,162 + ABIE41_RS22015 0.26 -1.0
4,526,162 + ABIE41_RS22015 0.26 +0.5
4,526,163 - ABIE41_RS22015 0.26 -0.5
4,526,163 - ABIE41_RS22015 0.26 -0.3
4,526,163 - ABIE41_RS22015 0.26 -0.6
4,526,163 - ABIE41_RS22015 0.26 +1.8
4,526,163 - ABIE41_RS22015 0.26 +1.2
4,526,163 - ABIE41_RS22015 0.26 +0.1
4,526,163 - ABIE41_RS22015 0.26 +0.3
4,526,261 + ABIE41_RS22015 0.37 +0.3
4,526,261 + ABIE41_RS22015 0.37 +0.6
4,526,262 - ABIE41_RS22015 0.37 -2.0
4,526,262 - ABIE41_RS22015 0.37 +0.1
4,526,262 - ABIE41_RS22015 0.37 -0.5
4,526,546 + ABIE41_RS22015 0.68 +0.0
4,526,561 + ABIE41_RS22015 0.70 +0.6
4,526,561 + ABIE41_RS22015 0.70 -0.0
4,526,561 + ABIE41_RS22015 0.70 -0.1
4,526,561 + ABIE41_RS22015 0.70 +2.3
4,526,562 - ABIE41_RS22015 0.70 +0.5
4,526,562 - ABIE41_RS22015 0.70 -2.6
4,526,562 - ABIE41_RS22015 0.70 +0.0
4,526,562 - ABIE41_RS22015 0.70 -1.0
4,526,562 - ABIE41_RS22015 0.70 -0.9
4,526,597 + ABIE41_RS22015 0.74 -0.2
4,526,597 + ABIE41_RS22015 0.74 -0.4
4,526,619 + ABIE41_RS22015 0.76 -1.3
4,526,620 - ABIE41_RS22015 0.76 +0.0
4,526,741 + ABIE41_RS22015 0.90 +0.5

Or see this region's nucleotide sequence