Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21180 and ABIE41_RS21185 are separated by 270 nucleotides ABIE41_RS21185 and ABIE41_RS21190 are separated by 9 nucleotides ABIE41_RS21190 and ABIE41_RS21195 are separated by 239 nucleotides
ABIE41_RS21180: ABIE41_RS21180 - transporter substrate-binding domain-containing protein, at 4,354,070 to 4,354,849
_RS21180
ABIE41_RS21185: ABIE41_RS21185 - hypothetical protein, at 4,355,120 to 4,355,797
_RS21185
ABIE41_RS21190: ABIE41_RS21190 - agmatinase, at 4,355,807 to 4,356,859
_RS21190
ABIE41_RS21195: ABIE41_RS21195 - TRAP transporter substrate-binding protein, at 4,357,099 to 4,358,184
_RS21195
Position (kb) 4355
4356
4357 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4354.852 kb on + strand at 4354.852 kb on + strand at 4355.066 kb on + strand at 4355.066 kb on + strand at 4355.066 kb on + strand at 4355.067 kb on - strand at 4355.600 kb on + strand, within ABIE41_RS21185 at 4355.601 kb on - strand, within ABIE41_RS21185 at 4355.907 kb on + strand at 4355.907 kb on + strand at 4355.907 kb on + strand at 4355.908 kb on - strand at 4356.066 kb on + strand, within ABIE41_RS21190 at 4356.066 kb on + strand, within ABIE41_RS21190 at 4356.066 kb on + strand, within ABIE41_RS21190 at 4356.066 kb on + strand, within ABIE41_RS21190 at 4356.066 kb on + strand, within ABIE41_RS21190 at 4356.066 kb on + strand, within ABIE41_RS21190 at 4356.066 kb on + strand, within ABIE41_RS21190 at 4356.066 kb on + strand, within ABIE41_RS21190 at 4356.066 kb on + strand, within ABIE41_RS21190 at 4356.066 kb on + strand, within ABIE41_RS21190 at 4356.067 kb on - strand, within ABIE41_RS21190 at 4356.067 kb on - strand, within ABIE41_RS21190 at 4356.067 kb on - strand, within ABIE41_RS21190 at 4356.067 kb on - strand, within ABIE41_RS21190 at 4356.067 kb on - strand, within ABIE41_RS21190 at 4356.067 kb on - strand, within ABIE41_RS21190 at 4356.168 kb on + strand, within ABIE41_RS21190 at 4356.168 kb on + strand, within ABIE41_RS21190 at 4356.169 kb on - strand, within ABIE41_RS21190 at 4356.186 kb on + strand, within ABIE41_RS21190 at 4356.186 kb on + strand, within ABIE41_RS21190 at 4356.187 kb on - strand, within ABIE41_RS21190 at 4356.372 kb on + strand, within ABIE41_RS21190 at 4356.376 kb on - strand, within ABIE41_RS21190 at 4356.376 kb on - strand, within ABIE41_RS21190 at 4356.478 kb on - strand, within ABIE41_RS21190 at 4356.478 kb on - strand, within ABIE41_RS21190 at 4356.700 kb on - strand, within ABIE41_RS21190 at 4356.799 kb on + strand at 4356.822 kb on + strand at 4356.823 kb on - strand at 4356.918 kb on + strand at 4356.918 kb on + strand at 4356.918 kb on + strand at 4357.015 kb on + strand at 4357.016 kb on - strand at 4357.016 kb on - strand at 4357.098 kb on + strand at 4357.237 kb on + strand, within ABIE41_RS21195 at 4357.237 kb on + strand, within ABIE41_RS21195 at 4357.238 kb on - strand, within ABIE41_RS21195 at 4357.238 kb on - strand, within ABIE41_RS21195 at 4357.390 kb on + strand, within ABIE41_RS21195 at 4357.391 kb on - strand, within ABIE41_RS21195 at 4357.391 kb on - strand, within ABIE41_RS21195 at 4357.393 kb on + strand, within ABIE41_RS21195 at 4357.393 kb on + strand, within ABIE41_RS21195 at 4357.393 kb on + strand, within ABIE41_RS21195 at 4357.393 kb on + strand, within ABIE41_RS21195 at 4357.394 kb on - strand, within ABIE41_RS21195 at 4357.394 kb on - strand, within ABIE41_RS21195 at 4357.394 kb on - strand, within ABIE41_RS21195 at 4357.394 kb on - strand, within ABIE41_RS21195 at 4357.394 kb on - strand, within ABIE41_RS21195 at 4357.396 kb on + strand, within ABIE41_RS21195 at 4357.396 kb on + strand, within ABIE41_RS21195 at 4357.396 kb on + strand, within ABIE41_RS21195 at 4357.396 kb on + strand, within ABIE41_RS21195 at 4357.396 kb on + strand, within ABIE41_RS21195 at 4357.397 kb on - strand, within ABIE41_RS21195 at 4357.397 kb on - strand, within ABIE41_RS21195 at 4357.397 kb on - strand, within ABIE41_RS21195 at 4357.397 kb on - strand, within ABIE41_RS21195 at 4357.397 kb on - strand, within ABIE41_RS21195 at 4357.397 kb on - strand, within ABIE41_RS21195 at 4357.397 kb on - strand, within ABIE41_RS21195 at 4357.477 kb on + strand, within ABIE41_RS21195 at 4357.531 kb on + strand, within ABIE41_RS21195 at 4357.531 kb on + strand, within ABIE41_RS21195 at 4357.531 kb on + strand, within ABIE41_RS21195 at 4357.531 kb on + strand, within ABIE41_RS21195 at 4357.531 kb on + strand, within ABIE41_RS21195 at 4357.532 kb on - strand, within ABIE41_RS21195 at 4357.699 kb on + strand, within ABIE41_RS21195 at 4357.699 kb on + strand, within ABIE41_RS21195 at 4357.699 kb on + strand, within ABIE41_RS21195 at 4357.700 kb on - strand, within ABIE41_RS21195 at 4357.700 kb on - strand, within ABIE41_RS21195 at 4357.792 kb on + strand, within ABIE41_RS21195 at 4357.793 kb on - strand, within ABIE41_RS21195 at 4357.795 kb on + strand, within ABIE41_RS21195 at 4357.795 kb on + strand, within ABIE41_RS21195 at 4357.796 kb on - strand, within ABIE41_RS21195 at 4357.796 kb on - strand, within ABIE41_RS21195 at 4357.798 kb on + strand, within ABIE41_RS21195 at 4357.799 kb on - strand, within ABIE41_RS21195 at 4357.799 kb on - strand, within ABIE41_RS21195 at 4357.799 kb on - strand, within ABIE41_RS21195
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 4,354,852 + +0.2 4,354,852 + -0.3 4,355,066 + -0.3 4,355,066 + -2.0 4,355,066 + -0.6 4,355,067 - -0.6 4,355,600 + ABIE41_RS21185 0.71 -0.8 4,355,601 - ABIE41_RS21185 0.71 -0.9 4,355,907 + +0.3 4,355,907 + -0.5 4,355,907 + -1.2 4,355,908 - -0.5 4,356,066 + ABIE41_RS21190 0.25 +1.2 4,356,066 + ABIE41_RS21190 0.25 -0.1 4,356,066 + ABIE41_RS21190 0.25 -1.4 4,356,066 + ABIE41_RS21190 0.25 -1.6 4,356,066 + ABIE41_RS21190 0.25 -1.2 4,356,066 + ABIE41_RS21190 0.25 +0.3 4,356,066 + ABIE41_RS21190 0.25 +0.6 4,356,066 + ABIE41_RS21190 0.25 -0.0 4,356,066 + ABIE41_RS21190 0.25 -1.6 4,356,066 + ABIE41_RS21190 0.25 +2.4 4,356,067 - ABIE41_RS21190 0.25 -0.3 4,356,067 - ABIE41_RS21190 0.25 -1.4 4,356,067 - ABIE41_RS21190 0.25 +0.2 4,356,067 - ABIE41_RS21190 0.25 -1.8 4,356,067 - ABIE41_RS21190 0.25 +0.1 4,356,067 - ABIE41_RS21190 0.25 +0.3 4,356,168 + ABIE41_RS21190 0.34 -0.0 4,356,168 + ABIE41_RS21190 0.34 -1.2 4,356,169 - ABIE41_RS21190 0.34 -0.3 4,356,186 + ABIE41_RS21190 0.36 -0.4 4,356,186 + ABIE41_RS21190 0.36 -1.2 4,356,187 - ABIE41_RS21190 0.36 +0.9 4,356,372 + ABIE41_RS21190 0.54 +0.0 4,356,376 - ABIE41_RS21190 0.54 +0.2 4,356,376 - ABIE41_RS21190 0.54 +0.4 4,356,478 - ABIE41_RS21190 0.64 +1.6 4,356,478 - ABIE41_RS21190 0.64 +0.4 4,356,700 - ABIE41_RS21190 0.85 -0.4 4,356,799 + -1.1 4,356,822 + -0.4 4,356,823 - -0.1 4,356,918 + -0.1 4,356,918 + -0.2 4,356,918 + +0.2 4,357,015 + +0.1 4,357,016 - -0.3 4,357,016 - +0.5 4,357,098 + -2.0 4,357,237 + ABIE41_RS21195 0.13 +0.1 4,357,237 + ABIE41_RS21195 0.13 +0.2 4,357,238 - ABIE41_RS21195 0.13 +1.2 4,357,238 - ABIE41_RS21195 0.13 +0.6 4,357,390 + ABIE41_RS21195 0.27 +0.9 4,357,391 - ABIE41_RS21195 0.27 -1.1 4,357,391 - ABIE41_RS21195 0.27 -1.2 4,357,393 + ABIE41_RS21195 0.27 +0.6 4,357,393 + ABIE41_RS21195 0.27 +0.3 4,357,393 + ABIE41_RS21195 0.27 +0.1 4,357,393 + ABIE41_RS21195 0.27 -1.2 4,357,394 - ABIE41_RS21195 0.27 -1.9 4,357,394 - ABIE41_RS21195 0.27 +0.9 4,357,394 - ABIE41_RS21195 0.27 -1.0 4,357,394 - ABIE41_RS21195 0.27 +0.9 4,357,394 - ABIE41_RS21195 0.27 -1.4 4,357,396 + ABIE41_RS21195 0.27 -0.8 4,357,396 + ABIE41_RS21195 0.27 -0.0 4,357,396 + ABIE41_RS21195 0.27 +0.7 4,357,396 + ABIE41_RS21195 0.27 -0.3 4,357,396 + ABIE41_RS21195 0.27 +1.1 4,357,397 - ABIE41_RS21195 0.27 +0.7 4,357,397 - ABIE41_RS21195 0.27 -0.8 4,357,397 - ABIE41_RS21195 0.27 -0.0 4,357,397 - ABIE41_RS21195 0.27 +0.4 4,357,397 - ABIE41_RS21195 0.27 +0.9 4,357,397 - ABIE41_RS21195 0.27 +0.3 4,357,397 - ABIE41_RS21195 0.27 -1.3 4,357,477 + ABIE41_RS21195 0.35 +2.0 4,357,531 + ABIE41_RS21195 0.40 +0.4 4,357,531 + ABIE41_RS21195 0.40 -0.5 4,357,531 + ABIE41_RS21195 0.40 +0.1 4,357,531 + ABIE41_RS21195 0.40 +0.8 4,357,531 + ABIE41_RS21195 0.40 +0.4 4,357,532 - ABIE41_RS21195 0.40 -0.0 4,357,699 + ABIE41_RS21195 0.55 +0.4 4,357,699 + ABIE41_RS21195 0.55 -0.2 4,357,699 + ABIE41_RS21195 0.55 -0.0 4,357,700 - ABIE41_RS21195 0.55 +0.2 4,357,700 - ABIE41_RS21195 0.55 +0.8 4,357,792 + ABIE41_RS21195 0.64 -2.3 4,357,793 - ABIE41_RS21195 0.64 -0.6 4,357,795 + ABIE41_RS21195 0.64 +2.1 4,357,795 + ABIE41_RS21195 0.64 +0.3 4,357,796 - ABIE41_RS21195 0.64 -0.4 4,357,796 - ABIE41_RS21195 0.64 -0.3 4,357,798 + ABIE41_RS21195 0.64 +0.2 4,357,799 - ABIE41_RS21195 0.64 +0.1 4,357,799 - ABIE41_RS21195 0.64 -0.1 4,357,799 - ABIE41_RS21195 0.64 +1.6
Or see this region's nucleotide sequence