Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS13655 and ABIE41_RS13660 are separated by 149 nucleotides ABIE41_RS13660 and ABIE41_RS13665 are separated by 23 nucleotides ABIE41_RS13665 and ABIE41_RS13670 are separated by 153 nucleotides
ABIE41_RS13655: ABIE41_RS13655 - GntR family transcriptional regulator, at 2,804,048 to 2,804,749
_RS13655
ABIE41_RS13660: ABIE41_RS13660 - flavin reductase family protein, at 2,804,899 to 2,805,417
_RS13660
ABIE41_RS13665: ABIE41_RS13665 - 4-carboxymuconolactone decarboxylase, at 2,805,441 to 2,805,842
_RS13665
ABIE41_RS13670: ABIE41_RS13670 - 3-oxoadipate enol-lactonase, at 2,805,996 to 2,806,775
_RS13670
Position (kb)
2804
2805
2806 Strain fitness (log2 ratio)
-1
0
1
2 at 2803.994 kb on + strand at 2804.480 kb on + strand, within ABIE41_RS13655 at 2804.480 kb on + strand, within ABIE41_RS13655 at 2804.481 kb on - strand, within ABIE41_RS13655 at 2804.482 kb on + strand, within ABIE41_RS13655 at 2804.482 kb on + strand, within ABIE41_RS13655 at 2804.483 kb on - strand, within ABIE41_RS13655 at 2804.483 kb on - strand, within ABIE41_RS13655 at 2804.531 kb on - strand, within ABIE41_RS13655 at 2804.538 kb on - strand, within ABIE41_RS13655 at 2804.538 kb on - strand, within ABIE41_RS13655 at 2804.538 kb on - strand, within ABIE41_RS13655 at 2804.776 kb on - strand at 2804.776 kb on - strand at 2804.776 kb on - strand at 2804.777 kb on + strand at 2804.778 kb on - strand at 2804.778 kb on - strand at 2805.225 kb on + strand, within ABIE41_RS13660 at 2805.226 kb on - strand, within ABIE41_RS13660 at 2805.226 kb on - strand, within ABIE41_RS13660 at 2805.389 kb on - strand at 2805.526 kb on + strand, within ABIE41_RS13665 at 2805.526 kb on + strand, within ABIE41_RS13665 at 2805.527 kb on - strand, within ABIE41_RS13665 at 2805.772 kb on + strand, within ABIE41_RS13665 at 2805.772 kb on + strand, within ABIE41_RS13665 at 2805.772 kb on + strand, within ABIE41_RS13665 at 2805.772 kb on + strand, within ABIE41_RS13665 at 2805.772 kb on + strand, within ABIE41_RS13665 at 2805.772 kb on + strand, within ABIE41_RS13665 at 2805.772 kb on + strand, within ABIE41_RS13665 at 2805.772 kb on + strand, within ABIE41_RS13665 at 2805.773 kb on - strand, within ABIE41_RS13665 at 2805.773 kb on - strand, within ABIE41_RS13665 at 2805.773 kb on - strand, within ABIE41_RS13665 at 2805.773 kb on - strand, within ABIE41_RS13665 at 2806.234 kb on + strand, within ABIE41_RS13670 at 2806.407 kb on - strand, within ABIE41_RS13670 at 2806.407 kb on - strand, within ABIE41_RS13670
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 2,803,994 + +0.3 2,804,480 + ABIE41_RS13655 0.62 +1.6 2,804,480 + ABIE41_RS13655 0.62 +0.0 2,804,481 - ABIE41_RS13655 0.62 -0.1 2,804,482 + ABIE41_RS13655 0.62 +0.6 2,804,482 + ABIE41_RS13655 0.62 +0.7 2,804,483 - ABIE41_RS13655 0.62 +0.8 2,804,483 - ABIE41_RS13655 0.62 +0.6 2,804,531 - ABIE41_RS13655 0.69 +0.5 2,804,538 - ABIE41_RS13655 0.70 +1.3 2,804,538 - ABIE41_RS13655 0.70 -0.6 2,804,538 - ABIE41_RS13655 0.70 +2.0 2,804,776 - +0.1 2,804,776 - +1.2 2,804,776 - +0.6 2,804,777 + +1.2 2,804,778 - -0.2 2,804,778 - -0.1 2,805,225 + ABIE41_RS13660 0.63 +1.4 2,805,226 - ABIE41_RS13660 0.63 -0.7 2,805,226 - ABIE41_RS13660 0.63 +0.8 2,805,389 - +0.3 2,805,526 + ABIE41_RS13665 0.21 +0.4 2,805,526 + ABIE41_RS13665 0.21 +0.6 2,805,527 - ABIE41_RS13665 0.21 -0.5 2,805,772 + ABIE41_RS13665 0.82 +0.9 2,805,772 + ABIE41_RS13665 0.82 +0.8 2,805,772 + ABIE41_RS13665 0.82 +0.2 2,805,772 + ABIE41_RS13665 0.82 -0.3 2,805,772 + ABIE41_RS13665 0.82 -0.3 2,805,772 + ABIE41_RS13665 0.82 -0.2 2,805,772 + ABIE41_RS13665 0.82 +1.3 2,805,772 + ABIE41_RS13665 0.82 -1.7 2,805,773 - ABIE41_RS13665 0.83 +0.6 2,805,773 - ABIE41_RS13665 0.83 +0.9 2,805,773 - ABIE41_RS13665 0.83 +1.5 2,805,773 - ABIE41_RS13665 0.83 +0.2 2,806,234 + ABIE41_RS13670 0.31 -1.4 2,806,407 - ABIE41_RS13670 0.53 +0.1 2,806,407 - ABIE41_RS13670 0.53 +0.6
Or see this region's nucleotide sequence