Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS11660 and ABIE41_RS11665 are separated by 107 nucleotides ABIE41_RS11665 and ABIE41_RS11670 are separated by 198 nucleotides ABIE41_RS11670 and ABIE41_RS11675 are separated by 206 nucleotides
ABIE41_RS11660: ABIE41_RS11660 - 3-isopropylmalate dehydratase large subunit, at 2,391,329 to 2,392,747
_RS11660
ABIE41_RS11665: ABIE41_RS11665 - hypothetical protein, at 2,392,855 to 2,393,031
_RS11665
ABIE41_RS11670: ABIE41_RS11670 - 50S ribosomal protein L19, at 2,393,230 to 2,393,625
_RS11670
ABIE41_RS11675: ABIE41_RS11675 - SDR family oxidoreductase, at 2,393,832 to 2,394,620
_RS11675
Position (kb)
2393
2394 Strain fitness (log2 ratio)
-1
0
1 at 2393.231 kb on + strand at 2393.231 kb on + strand at 2393.232 kb on - strand at 2393.232 kb on - strand at 2393.232 kb on - strand at 2393.319 kb on - strand, within ABIE41_RS11670 at 2393.322 kb on - strand, within ABIE41_RS11670 at 2394.528 kb on + strand, within ABIE41_RS11675 at 2394.528 kb on + strand, within ABIE41_RS11675 at 2394.528 kb on + strand, within ABIE41_RS11675 at 2394.528 kb on + strand, within ABIE41_RS11675 at 2394.528 kb on + strand, within ABIE41_RS11675 at 2394.529 kb on - strand, within ABIE41_RS11675 at 2394.529 kb on - strand, within ABIE41_RS11675 at 2394.529 kb on - strand, within ABIE41_RS11675
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 2,393,231 + +0.0 2,393,231 + -1.0 2,393,232 - +0.6 2,393,232 - +0.1 2,393,232 - +0.1 2,393,319 - ABIE41_RS11670 0.22 +1.1 2,393,322 - ABIE41_RS11670 0.23 +0.8 2,394,528 + ABIE41_RS11675 0.88 +0.1 2,394,528 + ABIE41_RS11675 0.88 +1.6 2,394,528 + ABIE41_RS11675 0.88 -0.8 2,394,528 + ABIE41_RS11675 0.88 -0.4 2,394,528 + ABIE41_RS11675 0.88 -0.5 2,394,529 - ABIE41_RS11675 0.88 +1.4 2,394,529 - ABIE41_RS11675 0.88 -0.9 2,394,529 - ABIE41_RS11675 0.88 -0.6
Or see this region's nucleotide sequence