Strain Fitness in Bosea sp. OAE506 around ABIE41_RS00130

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS00125 and ABIE41_RS00130 are separated by 220 nucleotidesABIE41_RS00130 and ABIE41_RS00135 are separated by 158 nucleotidesABIE41_RS00135 and ABIE41_RS00140 are separated by 2 nucleotides ABIE41_RS00125: ABIE41_RS00125 - RNA polymerase factor sigma-54, at 18,900 to 20,426 _RS00125 ABIE41_RS00130: ABIE41_RS00130 - LPS export ABC transporter ATP-binding protein, at 20,647 to 21,435 _RS00130 ABIE41_RS00135: ABIE41_RS00135 - LptA/OstA family protein, at 21,594 to 22,271 _RS00135 ABIE41_RS00140: ABIE41_RS00140 - LPS export ABC transporter periplasmic protein LptC, at 22,274 to 23,050 _RS00140 Position (kb) 20 21 22Strain fitness (log2 ratio) -2 -1 0 1at 19.814 kb on + strand, within ABIE41_RS00125at 19.815 kb on - strand, within ABIE41_RS00125at 20.060 kb on - strand, within ABIE41_RS00125at 20.060 kb on - strand, within ABIE41_RS00125at 20.060 kb on - strand, within ABIE41_RS00125at 20.206 kb on + strand, within ABIE41_RS00125at 20.207 kb on - strand, within ABIE41_RS00125at 20.207 kb on - strand, within ABIE41_RS00125at 20.207 kb on - strand, within ABIE41_RS00125at 20.545 kb on + strandat 20.545 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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19,814 + ABIE41_RS00125 0.60 -2.3
19,815 - ABIE41_RS00125 0.60 -1.4
20,060 - ABIE41_RS00125 0.76 -2.2
20,060 - ABIE41_RS00125 0.76 -0.5
20,060 - ABIE41_RS00125 0.76 -0.9
20,206 + ABIE41_RS00125 0.86 -0.6
20,207 - ABIE41_RS00125 0.86 +0.1
20,207 - ABIE41_RS00125 0.86 -0.5
20,207 - ABIE41_RS00125 0.86 -0.7
20,545 + +0.1
20,545 + +0.1

Or see this region's nucleotide sequence