Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28840 and ABID97_RS28845 are separated by 38 nucleotides ABID97_RS28845 and ABID97_RS28850 are separated by 137 nucleotides ABID97_RS28850 and ABID97_RS28855 are separated by 33 nucleotides
ABID97_RS28840: ABID97_RS28840 - ferritin-like domain-containing protein, at 684,750 to 685,319
_RS28840
ABID97_RS28845: ABID97_RS28845 - RNA polymerase sigma factor, at 685,358 to 686,065
_RS28845
ABID97_RS28850: ABID97_RS28850 - chloride channel protein, at 686,203 to 687,960
_RS28850
ABID97_RS28855: ABID97_RS28855 - PAS domain-containing protein, at 687,994 to 690,981
_RS28855
Position (kb) 686
687
688 Strain fitness (log2 ratio) -1
0
1 at 685.323 kb on + strand at 685.324 kb on - strand at 685.324 kb on - strand at 685.863 kb on + strand, within ABID97_RS28845 at 685.863 kb on + strand, within ABID97_RS28845 at 686.160 kb on + strand at 686.465 kb on - strand, within ABID97_RS28850 at 686.977 kb on + strand, within ABID97_RS28850 at 686.977 kb on + strand, within ABID97_RS28850 at 687.065 kb on - strand, within ABID97_RS28850 at 687.302 kb on + strand, within ABID97_RS28850 at 687.302 kb on + strand, within ABID97_RS28850 at 687.303 kb on - strand, within ABID97_RS28850 at 687.303 kb on - strand, within ABID97_RS28850 at 687.496 kb on + strand, within ABID97_RS28850 at 687.607 kb on + strand, within ABID97_RS28850 at 688.064 kb on + strand at 688.064 kb on + strand at 688.400 kb on + strand, within ABID97_RS28855 at 688.400 kb on + strand, within ABID97_RS28855 at 688.613 kb on + strand, within ABID97_RS28855 at 688.613 kb on + strand, within ABID97_RS28855 at 688.614 kb on - strand, within ABID97_RS28855 at 688.634 kb on + strand, within ABID97_RS28855 at 688.634 kb on + strand, within ABID97_RS28855 at 688.635 kb on - strand, within ABID97_RS28855 at 688.749 kb on + strand, within ABID97_RS28855 at 688.750 kb on - strand, within ABID97_RS28855 at 688.750 kb on - strand, within ABID97_RS28855 at 688.750 kb on - strand, within ABID97_RS28855 at 688.750 kb on - strand, within ABID97_RS28855 at 688.793 kb on + strand, within ABID97_RS28855 at 688.836 kb on - strand, within ABID97_RS28855 at 688.943 kb on + strand, within ABID97_RS28855 at 688.944 kb on - strand, within ABID97_RS28855 at 688.944 kb on - strand, within ABID97_RS28855
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 685,323 + +0.6 685,324 - -1.7 685,324 - +0.2 685,863 + ABID97_RS28845 0.71 -0.0 685,863 + ABID97_RS28845 0.71 -1.1 686,160 + +0.2 686,465 - ABID97_RS28850 0.15 +0.2 686,977 + ABID97_RS28850 0.44 -0.2 686,977 + ABID97_RS28850 0.44 -0.0 687,065 - ABID97_RS28850 0.49 -0.4 687,302 + ABID97_RS28850 0.63 +0.2 687,302 + ABID97_RS28850 0.63 +0.5 687,303 - ABID97_RS28850 0.63 -0.3 687,303 - ABID97_RS28850 0.63 +0.3 687,496 + ABID97_RS28850 0.74 +0.9 687,607 + ABID97_RS28850 0.80 -0.3 688,064 + +0.0 688,064 + -0.0 688,400 + ABID97_RS28855 0.14 -0.0 688,400 + ABID97_RS28855 0.14 -0.1 688,613 + ABID97_RS28855 0.21 -0.4 688,613 + ABID97_RS28855 0.21 -1.0 688,614 - ABID97_RS28855 0.21 -1.2 688,634 + ABID97_RS28855 0.21 -1.1 688,634 + ABID97_RS28855 0.21 -0.5 688,635 - ABID97_RS28855 0.21 -0.3 688,749 + ABID97_RS28855 0.25 -0.0 688,750 - ABID97_RS28855 0.25 -0.2 688,750 - ABID97_RS28855 0.25 -0.0 688,750 - ABID97_RS28855 0.25 -0.0 688,750 - ABID97_RS28855 0.25 +0.1 688,793 + ABID97_RS28855 0.27 -0.4 688,836 - ABID97_RS28855 0.28 -1.0 688,943 + ABID97_RS28855 0.32 -0.8 688,944 - ABID97_RS28855 0.32 +0.2 688,944 - ABID97_RS28855 0.32 +0.2
Or see this region's nucleotide sequence